Commits

Commit history

1. Commits on Dec 14, 2025

   • Refactor: fix SonarQube S1155 issues (#1079)

     Pasjonat90D

     committed
     c0240ddView commit details

     Copy full SHA for c0240dd

     View code at this pointBrowse repository at this point
2. Commits on Jan 7, 2025

   • Javadoc fix: errors in modfinder module

     josemduarte

     committed
     bb07329View commit details

     Copy full SHA for bb07329

     View code at this pointBrowse repository at this point
3. Commits on Apr 18, 2024

   • Fix sonar issue S2293 Replace the type specification in this constructor call with the diamond operator ('<>')

     jlerbsc

     committed
     b182121View commit details

     Copy full SHA for b182121

     View code at this pointBrowse repository at this point
4. Commits on Feb 26, 2024

   • fix: issue #1081 Sonar S1132 Strings literals should be placed on the left side when checking for equality

     jlerbsc

     committed
     ac75f31View commit details

     Copy full SHA for ac75f31

     View code at this pointBrowse repository at this point
5. Commits on Jun 30, 2023

   • Try-with from sonar

     josemduarte

     committed
     1678958View commit details

     Copy full SHA for 1678958

     View code at this pointBrowse repository at this point
6. Commits on Nov 18, 2022

   • vuln-fix: Temporary File Information Disclosure

     Show description for e3ecec5
     

     JLLeitschuh

     and

     TeamModerne

     committed
     e3ecec5View commit details

     Copy full SHA for e3ecec5

     View code at this pointBrowse repository at this point
7. Commits on Nov 7, 2021

   • Minor Miscellaneous formatting and import

     aalhossary

     committed
     419d5f0View commit details

     Copy full SHA for 419d5f0

     View code at this pointBrowse repository at this point
8. Commits on Jan 20, 2021

   • compiling

     sbittrich

     committed
     1b164a9View commit details

     Copy full SHA for 1b164a9

     View code at this pointBrowse repository at this point
9. Commits on Jun 13, 2020

   • refactor code to java 8 streams api

     balaji-s

     committed
     8998cbcView commit details

     Copy full SHA for 8998cbc

     View code at this pointBrowse repository at this point
10. Commits on Jan 3, 2019

    • Automatically convert spaces to tabs

      Show description for 9ae2c4f
      sbliven

      committed
      9ae2c4fView commit details

      Copy full SHA for 9ae2c4f

      View code at this pointBrowse repository at this point
11. Commits on Mar 12, 2018

    • Removing deprecations from v4

      josemduarte

      committed
      9dbf83cView commit details

      Copy full SHA for 9dbf83c

      View code at this pointBrowse repository at this point
12. Commits on Sep 8, 2017

    • Fixing phosphosite urls and changing default url timeout to 30s

      josemduarte

      committed
      67ca7f2View commit details

      Copy full SHA for 67ca7f2

      View code at this pointBrowse repository at this point
13. Commits on Nov 30, 2016

    • moving to Java 7

      andreasprlic

      committed
      4ee39f8View commit details

      Copy full SHA for 4ee39f8

      View code at this pointBrowse repository at this point

    • now also accepting old header line

      andreasprlic

      committed
      8210484View commit details

      Copy full SHA for 8210484

      View code at this pointBrowse repository at this point
14. Commits on Nov 29, 2016

    • fix for #610

      andreasprlic

      committed
      6f28672View commit details

      Copy full SHA for 6f28672

      View code at this pointBrowse repository at this point
15. Commits on Aug 8, 2016

    • new utility classes to detect if a Group is polymeric, an amino acid, or a nucleotide group.

      andreasprlic

      committed
      46560c7View commit details

      Copy full SHA for 46560c7

      View code at this pointBrowse repository at this point
16. Commits on Jun 10, 2016

    • Merge pull request #502 from andreasprlic/master

      Show description for 3509775
      josemduarte

      authored
      3509775View commit details

      Copy full SHA for 3509775

      View code at this pointBrowse repository at this point

    • distance have to be looked up by element name, not atom name

      andreasprlic

      committed
      ad192d9View commit details

      Copy full SHA for ad192d9

      View code at this pointBrowse repository at this point
17. Commits on Jun 9, 2016

    • Adds a new definitions file so the code can correctly detect Metal bonds. Slightly more efficient representation of standard amino acids.

      andreasprlic

      committed
      b39840aView commit details

      Copy full SHA for b39840a

      View code at this pointBrowse repository at this point
18. Commits on Jun 5, 2016

    • squid:S2131 - Primitives should not be boxed just for String conversion

      

      Mohamed Ezzat

      committed
      fa52fd8View commit details

      Copy full SHA for fa52fd8

      View code at this pointBrowse repository at this point
19. Commits on Jun 1, 2016

    • Allowing detection of PTMs that interact with Terbium, as reported by @epeisach . Also less verbose PTM junit test.

      andreasprlic

      committed
      c561c3aView commit details

      Copy full SHA for c561c3a

      View code at this pointBrowse repository at this point
20. Commits on May 11, 2016

    • Fixed modfinder tests

      josemduarte

      committed
      8459e6fView commit details

      Copy full SHA for 8459e6f

      View code at this pointBrowse repository at this point
21. Commits on May 4, 2016

    • Fix the compile errors - mainly by changin "setChainId" "setChainName"

      abradle

      committed
      a4f8795View commit details

      Copy full SHA for a4f8795

      View code at this pointBrowse repository at this point
22. Commits on Mar 9, 2016

    • More whitespace fixes

      sbliven

      committed
      af59f90View commit details

      Copy full SHA for af59f90

      View code at this pointBrowse repository at this point

    • Converting initial spaces to tabs.

      Show description for 2417c23
      sbliven

      committed
      2417c23View commit details

      Copy full SHA for 2417c23

      View code at this pointBrowse repository at this point

    • Remove trailing whitespace globally from .java files

      Show description for 809312e
      sbliven

      committed
      809312eView commit details

      Copy full SHA for 809312e

      View code at this pointBrowse repository at this point
23. Commits on Oct 6, 2015

    • Converting all line endings to Unix.

      Show description for 124269e
      sbliven

      committed
      124269eView commit details

      Copy full SHA for 124269e

      View code at this pointBrowse repository at this point
24. Commits on Jan 30, 2015

    • Refactoring of all package names according to #245 #242 #240

      andreasprlic

      committed
      28f55cbView commit details

      Copy full SHA for 28f55cb

      View code at this pointBrowse repository at this point
25. Commits on Jan 29, 2015

    • Ran Optimize Imports across the whole project.

      andreasprlic

      committed
      ac22449View commit details

      Copy full SHA for ac22449

      View code at this pointBrowse repository at this point

    • Major refactoring of package names in accordance with #245 #242 #240

      andreasprlic

      committed
      c0b168fView commit details

      Copy full SHA for c0b168f

      View code at this pointBrowse repository at this point
26. Loading