Commits

Commits on May 3, 2016

[maven-release-plugin] prepare release biojava-4.2.1
josemduarte
committed
8504664
[maven-release-plugin] rollback the release of biojava-4.2.1
josemduarte
committed
9c4091a
[maven-release-plugin] prepare release biojava-4.2.1
josemduarte
committed
337ea1a
Updated MMCif Parser to handle non-numeric data in the NCS operator field.

abradle
authored and
josemduarte
committed
9f48f17
#459 removing javaws dependency part 2

andreasprlic
authored and
josemduarte
committed
db37b87
cherry-picking: #459 removing javaws dependency

andreasprlic
authored and
josemduarte
committed
5150f8c

Commits on Apr 29, 2016

Added handling of '?' and other non integer string for the charge.

abradle
authored and
josemduarte
committed
f24019f
Refactored ChargeAdder and fixed bugs where it wasn't adding charges to all groups.

abradle
authored and
josemduarte
committed
22ab7d4

Commits on Apr 27, 2016

Fix #455. Use parsing params for AtomCache

sbliven
authored and
josemduarte
committed
348f91d

Commits on Apr 22, 2016

Fix #452 update ECOD javadoc
lafita
committed
1511d93
Update CATH default and latest versions to 4.0.0 #453
lafita
committed
2e06a8d
Fix bug in internal symmetry levels report
lafita
committed
021d3fc

Commits on Apr 11, 2016

Fixing bug in mmcif writing: ins codes were written as ascii code
josemduarte
committed
a191165

Commits on Apr 6, 2016

Fix #449 by copying SEQRES to new chains
sbliven
committed
bfb6a31
Switch DownloadChemCompProvider to use NIO for moving
sbliven
committed
e0c1ede

Commits on Mar 29, 2016

Display only elementary axes of symmetry
lafita
committed
93297eb
Implement method to calculate coverage of a MultipleAlignment
lafita
committed
1d9db1b
Port the getReasons method from symmetry project
lafita
committed
3037f70
Create two threshold parameters for CE-Symm
lafita
committed
125faf8
Take the best alignment of the optimization trajectory cesymm
lafita
committed
cb72185

Commits on Mar 25, 2016

Merge branch 'bugfixes-4.2' of github.com:biojava/biojava into bugfixes-4.2
andreasprlic
committed
d63491c
fixing a problem with reflection and changed method signatures.
andreasprlic
committed
aac75fe
Updating biojava-protein-comparison-tool dependencies
sbliven
committed
eb0d536
Setting 4.2.1-SNAPSHOT in all other poms
sbliven
committed
de60308
Logging and documentation
sbliven
committed
402c177
Fix major bug with BIO: identifiers
sbliven
committed
ea78f97

Commits on Mar 23, 2016

Add parameterized constructor to NCBIQBlastService to support BLAST on the cloud service providers

christiam
authored and
josemduarte
committed
2283913
Fixes for jdk8 javadoc errors

heuermh
authored and
josemduarte
committed
4669ea2

Commits on Mar 22, 2016

Fix small jmol display bug for internal symmetry
lafita
committed
5ea01f4

Commits on Mar 14, 2016

Fixed a bug where nucleotide bonds were not being generated. Added a test to ensure nucleotide bonds are being generated.

Anthony Bradley
authored and
josemduarte
committed
98f0f97
Setting 4.2.1-SNAPSHOT in pom
josemduarte
committed
196e14f

Commits on Mar 10, 2016