Commits

Breadcrumbs

History for

onmaster

User selector

All users

All time

Commit History

Commits on Apr 27, 2013

• using temporary file instead of updating

  Show description for 23bc366
  aalhossary

  committed
  23bc366

  Copy full SHA for 23bc366

• using temp file for File tmp = File

  Show description for 706858b
  aalhossary

  committed
  706858b

  Copy full SHA for 706858b

Commits on Nov 30, 2012

• [maven-release-plugin] prepare for next development iteration

  Show description for 6171169
  andreasprlic

  committed
  6171169

  Copy full SHA for 6171169

• [maven-release-plugin] prepare release biojava-3.0.5

  Show description for 9cd0a28
  andreasprlic

  committed
  9cd0a28

  Copy full SHA for 9cd0a28

Commits on Nov 10, 2012

• should take distribution config from parent

  Show description for b80a309
  andreasprlic

  committed
  b80a309

  Copy full SHA for b80a309

Commits on Sep 6, 2012

• Fixed the compile error in Feature.java

  Show description for 55d08f1
  CarmeloFoti

  committed
  55d08f1

  Copy full SHA for 55d08f1

Commits on Sep 4, 2012

• Removed the Log4j dependencies from the GFF3 parser.

  Show description for 887bd5f
  CarmeloFoti

  committed
  887bd5f

  Copy full SHA for 887bd5f

Commits on Aug 23, 2012

• Added indexes into FeatureList and GFF3Reader classes.

  Show description for 269196b
  CarmeloFoti

  committed
  269196b

  Copy full SHA for 269196b

Commits on Aug 10, 2012

• fix for unit test failures, use proper temp directory for test output files

  Show description for 158e7bc
  heuermh

  committed
  158e7bc

  Copy full SHA for 158e7bc

Commits on May 22, 2012

• [maven-release-plugin] prepare for next development iteration

  Show description for c3a9b6c
  andreasprlic

  committed
  c3a9b6c

  Copy full SHA for c3a9b6c

• [maven-release-plugin] prepare release biojava-3.0.4

  Show description for 2405479
  andreasprlic

  committed
  2405479

  Copy full SHA for 2405479

Commits on Mar 16, 2012

• [maven-release-plugin] prepare for next development iteration

  Show description for 80b45aa
  andreasprlic

  committed
  80b45aa

  Copy full SHA for 80b45aa

• [maven-release-plugin] prepare release biojava-3.0.3

  Show description for e15051b
  andreasprlic

  committed
  e15051b

  Copy full SHA for e15051b

Commits on Mar 15, 2012

• previous commit, "deleted genome.parsers.fastq and associated test classes (duplicated, they are in their own package, sequencing)" missed removing unit tests

  Show description for 89623e6
  heuermh

  committed
  89623e6

  Copy full SHA for 89623e6

• deleted genome.parsers.fastq and associated test classes (duplicated, they are in their own package, sequencing)

  Show description for 1e35977
  brandstaetter

  committed
  1e35977

  Copy full SHA for 1e35977

Commits on Mar 12, 2012

• undid more unnecessary reformatting that made the code harder to read in the Fastq test cases, also removed some unnecessary import statements

  Show description for c546532
  brandstaetter

  committed
  c546532

  Copy full SHA for c546532

• undid some unnecessary reformatting that made the code harder to read in FastqBuilderTest.java

  Show description for 9e64084
  brandstaetter

  committed
  9e64084

  Copy full SHA for 9e64084

• moved fastq classes from biojava3.sequencing.io.fastq to biojava3.genome.parsers.fastq

  Show description for 45149a6
  brandstaetter

  committed
  45149a6

  Copy full SHA for 45149a6

Commits on Jan 16, 2012

• Simplified boolean expressions.

  Show description for fb30b9a
  rthornton

  committed
  fb30b9a

  Copy full SHA for fb30b9a

Commits on Dec 15, 2011

• replacing < and > with &lt; and &gt; in order not to break HTML and enable generating .CHM files using http://jan.baresovi.cz/dr/en/javadoc-chm

  Show description for aa8d554
  aalhossary

  committed
  aa8d554

  Copy full SHA for aa8d554

Commits on Sep 2, 2011

• [maven-release-plugin] prepare for next development iteration

  Show description for 895585f
  andreasprlic

  committed
  895585f

  Copy full SHA for 895585f

• [maven-release-plugin] prepare release biojava-3.0.2

  Show description for 3cad094
  andreasprlic

  committed
  3cad094

  Copy full SHA for 3cad094

Commits on Aug 31, 2011

• cleaning pom files, removing warnings.

  Show description for 805d438
  andreasprlic

  committed
  805d438

  Copy full SHA for 805d438

Commits on Aug 30, 2011

• Ignore unit test output

  Show description for a733437
  sbliven

  committed
  a733437

  Copy full SHA for a733437

Commits on Feb 14, 2011

• [maven-release-plugin] prepare for next development iteration

  Show description for e6e4600
  andreasprlic

  committed
  e6e4600

  Copy full SHA for e6e4600

• [maven-release-plugin] prepare release biojava-3.0.1

  Show description for 0091b99
  andreasprlic

  committed
  0091b99

  Copy full SHA for 0091b99

Commits on Jan 24, 2011

• Added FeatureHelper which allows you to build indexes based on a feature attribute value. This is then used in GeneFeatureHelper when parsing a gmod gff3 file to quickly find the features that belo…

  Show description for 38ed004
  willishf

  committed
  38ed004

  Copy full SHA for 38ed004

Commits on Jan 21, 2011

• Added FeatureHelper which allows you to build indexes based on a feature attribute value. This is then used in GeneFeatureHelper when parsing a gmod gff3 file to quickly find the features that belo…

  Show description for 9e81180
  willishf

  committed
  9e81180

  Copy full SHA for 9e81180

Commits on Jan 1, 2011

• Test was failing if the location was at 1 and negative strand because internally stored as 0 and you can't have negative 0

  Show description for d7f76fe
  willishf

  committed
  d7f76fe

  Copy full SHA for d7f76fe

• Test was failing if the location was at 1 and negative strand because internally stored as 0 and you can't have negative 0

  Show description for 783fcef
  willishf

  committed
  783fcef

  Copy full SHA for 783fcef

Commits on Dec 28, 2010

• [maven-release-plugin] prepare for next development iteration

  Show description for c1a43cd
  andreasprlic

  committed
  c1a43cd

  Copy full SHA for c1a43cd

• [maven-release-plugin] prepare release biojava-3.0

  Show description for 674c87c
  andreasprlic

  committed
  674c87c

  Copy full SHA for 674c87c

Commits on Dec 23, 2010

• Changed test case reference where stop codons are being returned as * now

  Show description for 0447c67
  willishf

  committed
  0447c67

  Copy full SHA for 0447c67

Commits on Dec 22, 2010

• updating version nr. of depedencies.

  Show description for 5a924c0
  andreasprlic

  committed
  5a924c0

  Copy full SHA for 5a924c0

Commits on Dec 20, 2010

• Minor updates

  Show description for af17288
  willishf

  committed
  af17288

  Copy full SHA for af17288