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This updates our version of SHA1DC to e139984 (Merge pull request libgit2#35 from lidl/master, 2017-05-30).
The updated SHA1DC library allows us to use custom includes instead of using standard includes. Due to requirements with cross-platform, we provide some custom system includes files like for example the "stdint.h" file on Win32. Because of this, we want to make sure to avoid breaking cross-platform compatibility when SHA1DC is enabled. To use the new mechanism, we can simply define `SHA1DC_NO_STANDARD_INCLUDES`. Furthermore, we can specify custom include files via two defines, which we now use to include our "common.h" header.
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Upstream has fixed issues with both endianess and unaligned access, which we obviously want to include, as well. Furthermore, they have provided a mechanism to use custom includes, which we now use to include our "common.h" instead of the system standard includes. This should also improve our cross-platform compatibility.