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Questions about embedding layer selection and padding strategy in NTv3-650M-pre

Status: Open.

#143 In instadeepai/nucleotide-transformer;

· LudensZhang opened on Mar 5, 2026

inclusion of <cls> token in the pretraining procedure

Status: Open.

#142 In instadeepai/nucleotide-transformer;

· urlicht opened on Mar 4, 2026

Make torch installation optional and remove duplicate jax dependency

Status: Open.

#139 In instadeepai/nucleotide-transformer;

· sboshar opened on Feb 24, 2026

Make torch installation optional

Status: Open.

#138 In instadeepai/nucleotide-transformer;

· martinp7 opened on Feb 23, 2026

Duplicated jax in install_requires

Status: Open.

#137 In instadeepai/nucleotide-transformer;

· martinp7 opened on Feb 23, 2026

Technical Clarifications on Post-training: Clipping Logic, Stride Geometry, and Metric Scaling (log1p)

Status: Open.

#134 In instadeepai/nucleotide-transformer;

· ChengYe97 opened on Feb 4, 2026

Question regarding input sequence length standardization and cropping strategies in Figure 2a model comparisons

Status: Open.

#133 In instadeepai/nucleotide-transformer;

· skundei opened on Jan 30, 2026

Low confidence at prediction boundaries

Status: Open.

#120 In instadeepai/nucleotide-transformer;

· calengil opened on Nov 20, 2025

How to derive a GTF file from the matrix output by SegmentNT?

Status: Open.

#118 In instadeepai/nucleotide-transformer;

· komais opened on Nov 3, 2025