|
| 1 | +{ |
| 2 | + "cells": [ |
| 3 | + { |
| 4 | + "cell_type": "code", |
| 5 | + "execution_count": 1, |
| 6 | + "id": "f02f7349-ac1a-49b7-b304-d5b701723e0f", |
| 7 | + "metadata": {}, |
| 8 | + "outputs": [], |
| 9 | + "source": [ |
| 10 | + "%load_ext autoreload\n", |
| 11 | + "%autoreload 2" |
| 12 | + ] |
| 13 | + }, |
| 14 | + { |
| 15 | + "cell_type": "code", |
| 16 | + "execution_count": 1, |
| 17 | + "id": "d9f54448-7718-4212-ac6d-163a2d3be146", |
| 18 | + "metadata": {}, |
| 19 | + "outputs": [], |
| 20 | + "source": [ |
| 21 | + "import numpy as np\n", |
| 22 | + "from fastplotlib.graphics import LineGraphic, LineCollection, ImageGraphic\n", |
| 23 | + "from fastplotlib.plot import Plot\n", |
| 24 | + "import pickle" |
| 25 | + ] |
| 26 | + }, |
| 27 | + { |
| 28 | + "cell_type": "code", |
| 29 | + "execution_count": 2, |
| 30 | + "id": "b683c6d1-d926-43e3-a221-4ec6450e3677", |
| 31 | + "metadata": {}, |
| 32 | + "outputs": [], |
| 33 | + "source": [ |
| 34 | + "contours = pickle.load(open(\"/home/caitlin/Downloads/contours.pickle\", \"rb\"))" |
| 35 | + ] |
| 36 | + }, |
| 37 | + { |
| 38 | + "cell_type": "code", |
| 39 | + "execution_count": 3, |
| 40 | + "id": "26ced005-c52f-4696-903d-a6974ae6cefc", |
| 41 | + "metadata": {}, |
| 42 | + "outputs": [ |
| 43 | + { |
| 44 | + "data": { |
| 45 | + "application/vnd.jupyter.widget-view+json": { |
| 46 | + "model_id": "2bc75fa52d484cd1b03006a6530f10b3", |
| 47 | + "version_major": 2, |
| 48 | + "version_minor": 0 |
| 49 | + }, |
| 50 | + "text/plain": [ |
| 51 | + "RFBOutputContext()" |
| 52 | + ] |
| 53 | + }, |
| 54 | + "metadata": {}, |
| 55 | + "output_type": "display_data" |
| 56 | + }, |
| 57 | + { |
| 58 | + "name": "stderr", |
| 59 | + "output_type": "stream", |
| 60 | + "text": [ |
| 61 | + "MESA-INTEL: warning: Performance support disabled, consider sysctl dev.i915.perf_stream_paranoid=0\n", |
| 62 | + "\n" |
| 63 | + ] |
| 64 | + } |
| 65 | + ], |
| 66 | + "source": [ |
| 67 | + "plot = Plot()" |
| 68 | + ] |
| 69 | + }, |
| 70 | + { |
| 71 | + "cell_type": "code", |
| 72 | + "execution_count": 4, |
| 73 | + "id": "1aea0a61-db63-41e1-b330-5a922da4bac5", |
| 74 | + "metadata": {}, |
| 75 | + "outputs": [], |
| 76 | + "source": [ |
| 77 | + "line_collection = LineCollection(contours, cmap=\"Oranges\")" |
| 78 | + ] |
| 79 | + }, |
| 80 | + { |
| 81 | + "cell_type": "code", |
| 82 | + "execution_count": 5, |
| 83 | + "id": "310fd5b3-49f2-4dbb-831e-cb9f369d58c8", |
| 84 | + "metadata": {}, |
| 85 | + "outputs": [], |
| 86 | + "source": [ |
| 87 | + "plot.add_graphic(line_collection)" |
| 88 | + ] |
| 89 | + }, |
| 90 | + { |
| 91 | + "cell_type": "code", |
| 92 | + "execution_count": 6, |
| 93 | + "id": "661a5991-0de3-44d7-a626-2ae72704dcec", |
| 94 | + "metadata": {}, |
| 95 | + "outputs": [], |
| 96 | + "source": [ |
| 97 | + "image = ImageGraphic(data=np.ones((180, 180)))" |
| 98 | + ] |
| 99 | + }, |
| 100 | + { |
| 101 | + "cell_type": "code", |
| 102 | + "execution_count": 7, |
| 103 | + "id": "816f6382-f4ea-4cd4-b9f3-2dc5c232b0a5", |
| 104 | + "metadata": {}, |
| 105 | + "outputs": [], |
| 106 | + "source": [ |
| 107 | + "plot.add_graphic(image)" |
| 108 | + ] |
| 109 | + }, |
| 110 | + { |
| 111 | + "cell_type": "code", |
| 112 | + "execution_count": null, |
| 113 | + "id": "8187fd25-18e1-451f-b2fe-8cd2e7785c8b", |
| 114 | + "metadata": {}, |
| 115 | + "outputs": [], |
| 116 | + "source": [ |
| 117 | + "plot.show()" |
| 118 | + ] |
| 119 | + }, |
| 120 | + { |
| 121 | + "cell_type": "code", |
| 122 | + "execution_count": null, |
| 123 | + "id": "d5ddd3c4-84e2-44a3-a14f-74871aa0bb8f", |
| 124 | + "metadata": {}, |
| 125 | + "outputs": [], |
| 126 | + "source": [ |
| 127 | + "black = np.array([0.0, 0.0, 0.0, 1.0])" |
| 128 | + ] |
| 129 | + }, |
| 130 | + { |
| 131 | + "cell_type": "code", |
| 132 | + "execution_count": null, |
| 133 | + "id": "6ac64f1c-21e0-4c21-b968-3953e7858848", |
| 134 | + "metadata": {}, |
| 135 | + "outputs": [], |
| 136 | + "source": [ |
| 137 | + "from typing import *" |
| 138 | + ] |
| 139 | + }, |
| 140 | + { |
| 141 | + "cell_type": "code", |
| 142 | + "execution_count": null, |
| 143 | + "id": "d0d0c971-aac9-4c77-b88c-de9d79c7d74e", |
| 144 | + "metadata": {}, |
| 145 | + "outputs": [], |
| 146 | + "source": [ |
| 147 | + "def callback_function(source: Any, target: Any, event, new_data: Any):\n", |
| 148 | + " # calculate coms of line collection\n", |
| 149 | + " indices = np.array(event.pick_info[\"index\"])\n", |
| 150 | + " \n", |
| 151 | + " coms = list()\n", |
| 152 | + "\n", |
| 153 | + " for contour in target.items:\n", |
| 154 | + " coors = contour.data.feature_data[~np.isnan(contour.data.feature_data).any(axis=1)]\n", |
| 155 | + " com = coors.mean(axis=0)\n", |
| 156 | + " coms.append(com)\n", |
| 157 | + "\n", |
| 158 | + " # euclidean distance to find closest index of com \n", |
| 159 | + " indices = np.append(indices, [0])\n", |
| 160 | + " \n", |
| 161 | + " ix = np.linalg.norm((coms - indices), axis=1).argsort()[0]\n", |
| 162 | + " \n", |
| 163 | + " ix = int(ix)\n", |
| 164 | + " \n", |
| 165 | + " print(ix)\n", |
| 166 | + " \n", |
| 167 | + " target._set_feature(feature=\"colors\", new_data=new_data, indices=ix)\n", |
| 168 | + " \n", |
| 169 | + " return None" |
| 170 | + ] |
| 171 | + }, |
| 172 | + { |
| 173 | + "cell_type": "code", |
| 174 | + "execution_count": null, |
| 175 | + "id": "1a46d148-3007-4c7a-bf2b-91057eba855d", |
| 176 | + "metadata": {}, |
| 177 | + "outputs": [], |
| 178 | + "source": [ |
| 179 | + "image.link(event_type=\"click\", target=line_collection, feature=\"colors\", new_data=black, callback_function=callback_function)" |
| 180 | + ] |
| 181 | + }, |
| 182 | + { |
| 183 | + "cell_type": "code", |
| 184 | + "execution_count": null, |
| 185 | + "id": "8040456e-24a5-423b-8822-99a20e7ea470", |
| 186 | + "metadata": {}, |
| 187 | + "outputs": [], |
| 188 | + "source": [] |
| 189 | + } |
| 190 | + ], |
| 191 | + "metadata": { |
| 192 | + "kernelspec": { |
| 193 | + "display_name": "Python 3 (ipykernel)", |
| 194 | + "language": "python", |
| 195 | + "name": "python3" |
| 196 | + }, |
| 197 | + "language_info": { |
| 198 | + "codemirror_mode": { |
| 199 | + "name": "ipython", |
| 200 | + "version": 3 |
| 201 | + }, |
| 202 | + "file_extension": ".py", |
| 203 | + "mimetype": "text/x-python", |
| 204 | + "name": "python", |
| 205 | + "nbconvert_exporter": "python", |
| 206 | + "pygments_lexer": "ipython3", |
| 207 | + "version": "3.9.2" |
| 208 | + } |
| 209 | + }, |
| 210 | + "nbformat": 4, |
| 211 | + "nbformat_minor": 5 |
| 212 | +} |
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