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Pull requests: biopython/biopython
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fix(PDB): extend obsolete file handling to mmCIF and XML formats
#5231
opened Jun 2, 2026 by
mayank-dev-15
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Add missing magic method docstrings in SeqIO interfaces lines 124 & 127
#5230
opened Jun 1, 2026 by
ishiigos
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2 tasks done
Percent to f-strings using flynt v1.0.6
#5219
opened May 22, 2026 by
peterjc
Member
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3 tasks done
SeqUtils: Improve GC123 robustness and modernize SearchIO repr
#5214
opened May 16, 2026 by
Amnotreallyfunny
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Tests: add tests for six_frame_translations and nt_search in Bio.SeqUtils
#5211
opened May 11, 2026 by
amitsjc
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Add fasta-ncbi format for NCBI FASTA header dbxref parsing
#5201
opened Apr 17, 2026 by
mmokrejs
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Draw trees in vertical, horizontal and circular orientations
#5199
opened Apr 17, 2026 by
mmokrejs
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PERF: Optimise SequentialSeqFileRandomAccess index construction
#5198
opened Apr 17, 2026 by
mmokrejs
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3 tasks done
Support minimal MEME files without
Background letter frequencies line.
#5194
opened Apr 14, 2026 by
ghuls
Contributor
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3 tasks done
ENH: Native IUPAC resolution for partial gap codons in translate
#5186
opened Apr 4, 2026 by
mmokrejs
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ENH: Add high-performance HeaderParsers to sequential format IO modules
#5185
opened Apr 3, 2026 by
mmokrejs
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3 tasks done
Fix UnboundLocalError in calculate_consensus with zero counts
#5181
opened Mar 26, 2026 by
ernestprovo23
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3 tasks done
Replace sys.argv CLI with argparse subcommands in PDBList
#5180
opened Mar 26, 2026 by
ernestprovo23
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3 tasks done
Extend PDBList obsolete handling to mmCIF, XML and assemblies (#3988)
#5177
opened Mar 14, 2026 by
Abdeltoto
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Add AFDBList class for PDBList-like AlphaFold downloads (#3990)
#5176
opened Mar 14, 2026 by
Abdeltoto
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Replace assert with explicit if/raise in production code (#3600)
#5175
opened Mar 14, 2026 by
Abdeltoto
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2 of 3 tasks
GenBank parsing - handle misplaced
BASE COUNT line
#5173
opened Mar 3, 2026 by
manulera
Contributor
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PDBList: move obsolete files across formats and assemblies
#5170
opened Feb 26, 2026 by
LarytheLord
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fix: Deprecate query_letters and database_letters attributes
#5168
opened Feb 24, 2026 by
A404coder
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3 tasks done
Refactor PDBList CLI to use argparse while preserving legacy behavior
#5167
opened Feb 21, 2026 by
MANICHELLURII
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Fix argument type passed to get_spherical_coordinates
#5166
opened Feb 20, 2026 by
Augustin-Zidek
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2 tasks done
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