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Commits on Apr 7, 2026

• Fix issue with GenBank debug print (#5190)

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Commits on Mar 31, 2026

• Declare Python 3.10 support deprecated.

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Commits on Mar 30, 2026

• Remove stray file

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• Bump codecov/codecov-action from 5 to 6

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• Post Biopython 1.87 release version bump

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• Automatically update the docs symlink for new releases - Take 7

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• Automatically update the docs symlink for new releases - Take 6

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• Automatically update the docs symlink for new releases - Take 5

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• Automatically update the docs symlink for new releases - Take 4

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• Automatically update the docs symlink for new releases - Take 3

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• Automatically update the docs symlink for new releases - retry

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• Automatically update the docs symlink for new releases

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• Biopython 1.87

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Commits on Mar 16, 2026

• Bump geekyeggo/delete-artifact from 5 to 6

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  dependabot[bot]

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Commits on Mar 9, 2026

• Stress importance of the PR template

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• Fix vector test for NumPy 2.4

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• closes #5162

  

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Commits on Feb 25, 2026

• Fix `Entrez.Parser.DataHandler` URL security check continuity (related to #5109 and #5114) (#5148)

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Commits on Feb 19, 2026

• Using np.sin or np.cos was generating return values which were not plain float.

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• Drop older commented code lines in PDB vector code

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• Use more typical double indexing with numpy arrays

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• Added PERMISSIVE argument to MMCIFParser as in PDBParser. (#5134)

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Commits on Feb 12, 2026

• Correctly clean up files generated by the Phylo tutorial.

  

  xelandernt

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• Fix unstable doctest (key order random)

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• Migrate to pyproject.toml

  

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Commits on Jan 26, 2026

• Add test for run_psea using a temporary directory

  

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• Format Bio/PDB/PSEA.py with black

  

  kirandharmar867-maker

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• Run PSEA in a temporary directory to avoid leftover files

  

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Commits on Jan 23, 2026

• Avoid http links in Bio.Entrez (#5114)

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• Remove code that was deprecated in 1.85 (#5144)

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Commits on Jan 18, 2026

• Replace print statements with warnings/stderr in NCBIXML (#5140)

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Commits on Jan 17, 2026

• Silence PDBConstructionWarning in test_PDB_StructureAlignment

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• Replace Union and Optional with Python 3.10+ typing

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• Stay on mypy 1.16.1 and older black

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• Ignore B905 in ruff command line too

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