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Explain combined quat and internal symmetries
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lafita committed Aug 6, 2015
commit 7176268d0ad13a72f529b42eaafb2efaee3ba1d3
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Expand Up @@ -188,4 +188,17 @@ regions, with the help of the *Sequence Alignment Panel*.

## Combined Global Symmetry

Finally, the internal and quaternary symmetries can be combined to obtain the global
overall combined symmetry. As we have seen before, the protein 1VYM is a DNA-clamp that
has three chains relates by C3 symmetry. Each chain is internally C2 symmetric, and each
part of the C2 internal symmetry is C2 symmetric, so a case of **hierarchical symmetry**
(C2 + C2). Once we have divided the whole structure into its asymmetric parts, we can
analyze the global symmetry that related each one of them. The interesting result is that
in some cases, the internal symmetry **multiplies** the point group of the quaternary symmetry.
What seemed a C3 + C2 + C2 is combined into a D6 overall symmetry, as we can see in the figure
below:

![PDB ID 1VYM](img/symm_combined.png)

This results can gives hints about the function and evolution of proteins and biological
structures.