Improved ASA calculation performance - #820

Merged

sbliven merged 11 commits into

biojava:masterfrom

josemduarte:asaCalcPerformance

Jan 3, 2019

Commits on Jan 2, 2019

Neighbor indices now uses spatial hashing
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c213a7d
Supporting neighbors with and without SH
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3b99afd
A test, demoing that SH actually performs much worse
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a84609b
Doing all neighbor indices upfront
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1100299
Efficient neighbor index finding with SH
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ddeb759
Tidying up
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ede5cee
Logging, docs and some minimal optimization
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041482d
Logging and cleanup
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f42a0fa
Docs
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373a407

Commits on Jan 3, 2019

Docs
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b674136
Should be private
josemduarte
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8fb10fd