#505 switching to https for all NCBI traffic - #525
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* 'master' of github.com:biojava/biojava: [maven-release-plugin]prepare for next development iteration [maven-release-plugin]prepare release biojava-5.0.0-alpha5 Added some tests on the structures. Fix to add chemComp info for the Basic MMTF test. A test that round trips mmtf files Fixes to do with chemcomp behaviour for seqRes and normal Groups Fix for the MmtfStructureReader to handle altLoc being a null byte. Added myself to the developers list
* 'master' of github.com:biojava/biojava: (31 commits) Implement tests for new utility methods in sequence objects biojava#491 Method for total gapped positions and coverage in aligned sequences Method for percentage of identity of a sequence pair biojava#491 Include a second structure clustering after internal symmetry Simplify and rename Demo for Quaternary Symmetry in structure-gui Add a test for helical symmetry detection Port the ScanSymmetry script to the symmetry project Create an ENUM for the symmetry perception methods Adapt test for Quaternary Symmetry detection with same examples Complete refactoring of QuatSymmetryDetector into static methods Expand test on Subunit Clustering classes Replace the CombinationGenerator with a PowerSet generator Create a conversion method from List SubunitCluster to Subunits Refactor QuatSymmetryParameters to have only symmetry params Deprecate old Chain Clustering classes Implement and test for dividing SubunitClusters with internal symmetry Test for bio assemblies in Subunit Extractor Move Subunits back to the symmetry.core package Create static SubunitClusterer equivalent to ChainClusterer Create SubunitCluster class and test with methods to merge clusters ...
Member
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Commit d78ab0b seems unrelated, otherwise I'm +1 |
Member
Author
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ah yes, there were some other minor improvements in my branch which got pulled in by this. if you are +1, please just merge. These are just minor edits overall, as such no need to vote :-) |
Contributor
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This addresses #522. It would need to be merged to |
Member
Author
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I'll cherry pick this also to the bugfix branch (only the ncbi https commits, not secondary structure) |
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