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1. Commits on Sep 14, 2026

   • Merge pull request #1151 from aalhossary/aa/follow-redirects

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     josemduarte

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2. Commits on Sep 6, 2026

   • Do not pin the status an absent file returns

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     aalhossary

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     claude

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3. Commits on Aug 30, 2026

   • Follow the redirects HttpURLConnection declines

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     aalhossary

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4. Commits on Aug 15, 2026

   • Test that a 404 is neither cached nor recorded as valid

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     aalhossary

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   • Fix FileDownloadUtils validation and implement checksum verification

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     aalhossary

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5. Commits on Dec 14, 2025

   • Refactor: fix SonarQube S1155 issues (#1079)

     Pasjonat90D

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6. Commits on Jan 3, 2025

   • Javadoc fix: all other errors in core module

     josemduarte

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   • Javadoc fix: html-like tag not allowed

     josemduarte

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7. Commits on Jun 12, 2024

   • Fix issue s1319 Declarations should use Java collection interfaces on biojava-core and dependencies

     jlerbsc

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8. Commits on May 15, 2024

   • Fix issue s1319 Declarations should use Java collection interfaces on biojava-core

     jlerbsc

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9. Commits on Apr 24, 2024

   • Use toURI instead of getFile which doesn't have file scheme

     cometbroom

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10. Commits on Mar 4, 2024

    • Replacing home-made copy by Files.copy. Other minor fixes

      josemduarte

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11. Commits on Jan 14, 2024

    • Added access to the iterable

      hilbertglm

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12. Commits on Jan 13, 2024

    • Removed the MagicNumber class after finding InputStreamProvider

      hilbertglm

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    • Before finding the InputStreamProvider

      hilbertglm

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13. Commits on Dec 4, 2023

    • Fixing gh workflow warning and failing test

      josemduarte

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14. Commits on Jan 30, 2023

    • Merge pull request #1046 from BulkSecurityGeneratorProjectV2/fix/JLL/temporary_file_local_information_disclosure

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      josemduarte

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15. Commits on Jan 26, 2023

    • Merge pull request #1024 from aalhossary/add_file_download_validation

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      aalhossary

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16. Commits on Dec 24, 2022

    • Adding placeholder for several common hashing algorithms

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      aalhossary

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    • Minor corrections

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      aalhossary

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17. Commits on Nov 18, 2022

    • vuln-fix: Temporary File Information Disclosure

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      JLLeitschuh

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      TeamModerne

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18. Commits on Oct 18, 2022

    • removed unused import

      

      jamesmorris

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      jamesmorris

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    • Changes to improve the testGithub942 test

      

      jamesmorris

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      jamesmorris

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19. Commits on Oct 12, 2022

    • updated test data and tests

      

      jamesmorris

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      jamesmorris

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    • updated the test data and tests

      

      jamesmorris

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      jamesmorris

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    • Changed the file used for testing to one whith a much smaller sequence

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      jamesmorris

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      jamesmorris

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20. Commits on Oct 3, 2022

    • Removed getLocusName()

      

      jamesmorris

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      jamesmorris

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21. Commits on Jul 6, 2022

    • Added test for issue #886

      

      jamesmorris

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      jamesmorris

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22. Commits on Feb 22, 2022

    • Unit testing

      aalhossary

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23. Commits on Jan 5, 2022

    • Merge pull request #998 from richarda23/#944-testcoverage

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      josemduarte

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24. Commits on Jan 3, 2022

    • fixes #1008

      

      otter606

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      heuermh

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    • test MSA

      otter606

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    • remove duplicate generics

      otter606

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    • tidy up RNASeqTest

      otter606

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    • simplify generics in RNASequence

      otter606

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