Commits

History for

onbiojava-4.2.1

Commits on Apr 29, 2016

Added handling of '?' and other non integer string for the charge.

abradle
authored and
josemduarte
committed
f24019f
Refactored ChargeAdder and fixed bugs where it wasn't adding charges to all groups.

abradle
authored and
josemduarte
committed
22ab7d4

Commits on Apr 11, 2016

Fixing bug in mmcif writing: ins codes were written as ascii code
josemduarte
committed
a191165

Commits on Apr 6, 2016

Fix #449 by copying SEQRES to new chains
sbliven
committed
bfb6a31

Commits on Mar 14, 2016

Fixed a bug where nucleotide bonds were not being generated. Added a test to ensure nucleotide bonds are being generated.

Anthony Bradley
authored and
josemduarte
committed
98f0f97

Commits on Mar 10, 2016

Light cleanup:
sbliven
committed
38fbae1
Running spacestotabs on recent changes
sbliven
committed
5074cb2
Run addlicense
sbliven
committed
38e327b

Commits on Mar 9, 2016

Merge branch 'master' into removeLoadChemCompInfo
josemduarte
committed
d1b5c48
More whitespace fixes
sbliven
committed
af59f90
Converting initial spaces to tabs.
sbliven
committed
2417c23
Removing template messages
sbliven
committed
2bb0271
Remove trailing whitespace globally from .java files
sbliven
committed
809312e
Running addlicense.sh
sbliven
committed
f4e725f
Merge branch 'master' into removeLoadChemCompInfo
josemduarte
committed
832f106

Commits on Mar 8, 2016

Fixing a few bugs that arose after loadChemCompInfo removal, #426
josemduarte
committed
8da9d07
Fix PDBFileParser bug with missing trailing spaces.
sbliven
committed
1fe46b4
Fixed DBRef#toPDB() method to give 80 characters line

sroughley
authored and
sbliven
committed
716780a
Merge branch 'master' into removeLoadChemCompInfo
josemduarte
committed
3e808d4
Merge remote-tracking branch 'biojava/master'
sbliven
committed
e09358e
Honor prefixes for StructureNames
sbliven
committed
6b3bdb0
Tests pass now, except for TestLongPdbVsMmcif
josemduarte
committed
a73d6f5
Removing loadChemCompInfo, some tests don't pass yet
josemduarte
committed
0a68908

Commits on Mar 7, 2016

Changing TestBond to use mmcif
josemduarte
committed
1f4830f
Merge pull request #424 from edlunde-dnastar/zipchem
josemduarte
committed
7824f30
Use the SLF4J for logging rather than Java logger for ZipChemCommpProvider and unit test.
Matt Larson
committed
7d7fb15
Merge pull request #421 from josemduarte/bondsRewrite
josemduarte
committed
4e53ffe
ZipChemCompProvider cleanup:
larsonmattr
committed
e948e32

Commits on Mar 4, 2016

Commits on Mar 3, 2016

Removed some warnings and Structure.getConnections calls
josemduarte
committed
3e17e69
Correct significance criteria for internal symmetry
lafita
committed
e7235d4
Better name
josemduarte
committed
2e15b61