Commits

Breadcrumbs

History for

onncs

User selector

All users

All time

Commit history

Commits on Oct 3, 2017

• Updating genenames.org url to https

  josemduarte

  committed
  39d8c24View commit details

  Copy full SHA for 39d8c24

  View code at this pointBrowse repository at this point

Commits on Aug 15, 2017

• improvements

  valasatava

  committed
  3e2be54View commit details

  Copy full SHA for 3e2be54

  View code at this pointBrowse repository at this point

• Setter for chromosome coordinate systems: 0-based, 1-based

  valasatava

  committed
  b69ddfbView commit details

  Copy full SHA for b69ddfb

  View code at this pointBrowse repository at this point

• unit test fix

  valasatava

  committed
  e5813e8View commit details

  Copy full SHA for e5813e8

  View code at this pointBrowse repository at this point

• CDS length calculation bug fix

  valasatava

  committed
  033d92eView commit details

  Copy full SHA for 033d92e

  View code at this pointBrowse repository at this point

Commits on Apr 26, 2017

• Changing all line ending to unix (to match .gitattributes)

  sbliven

  committed
  21ea32aView commit details

  Copy full SHA for 21ea32a

  View code at this pointBrowse repository at this point

Commits on Apr 11, 2017

• Merge branch 'master' of https://github.com/valasatava/biojava

  valasatava

  committed
  4e20a41View commit details

  Copy full SHA for 4e20a41

  View code at this pointBrowse repository at this point

Commits on Apr 7, 2017

• Work with assemble hg19 or hg37 keyword

  valasatava

  committed
  31333afView commit details

  Copy full SHA for 31333af

  View code at this pointBrowse repository at this point

• Get CDS ranges patch

  valasatava

  committed
  b925bf9View commit details

  Copy full SHA for b925bf9

  View code at this pointBrowse repository at this point

Commits on Apr 5, 2017

• Get CDS ranges patch

  valasatava

  committed
  ece5062View commit details

  Copy full SHA for ece5062

  View code at this pointBrowse repository at this point

Commits on Apr 4, 2017

• TwoBitFile geneAssembly fix

  valasatava

  committed
  2de5a12View commit details

  Copy full SHA for 2de5a12

  View code at this pointBrowse repository at this point

• A class to download .2bit file

  valasatava

  committed
  bce7fedView commit details

  Copy full SHA for bce7fed

  View code at this pointBrowse repository at this point

• Refactoring FileDownload util to be a part of biojava-core project

  valasatava

  committed
  3cefc3fView commit details

  Copy full SHA for 3cefc3f

  View code at this pointBrowse repository at this point

Commits on Apr 3, 2017

• proxy for convertDNAtoProteinSequence

  valasatava

  committed
  d26e861View commit details

  Copy full SHA for d26e861

  View code at this pointBrowse repository at this point

Commits on Mar 28, 2017

• .2bit parser facade added

  valasatava

  committed
  d502469View commit details

  Copy full SHA for d502469

  View code at this pointBrowse repository at this point

Commits on Mar 23, 2017

• Fix for orientation value: compare to Character, not to String

  Show description for 1f3a6dc
  

  Yana Valasatava

  committed
  1f3a6dcView commit details

  Copy full SHA for 1f3a6dc

  View code at this pointBrowse repository at this point

Commits on Mar 21, 2017

• Changes required for Extracting protein sequence for genetic positions #642 pull request

  

  Yana Valasatava

  committed
  ef3b83aView commit details

  Copy full SHA for ef3b83a

  View code at this pointBrowse repository at this point

Commits on Mar 20, 2017

• Class to extract protein sequence from genetic positions

  

  Yana Valasatava

  committed
  4d00cd6View commit details

  Copy full SHA for 4d00cd6

  View code at this pointBrowse repository at this point

Commits on Feb 24, 2017

• Chromosome mapping tool: unit test to check handling multiple UTRs preceding the coding region

  

  Yana Valasatava

  committed
  495e3f1View commit details

  Copy full SHA for 495e3f1

  View code at this pointBrowse repository at this point

• Unit tests for converting a genomic position to the position on mRNA for the genes leaving on the forward strand

  

  Yana Valasatava

  committed
  5de7ea5View commit details

  Copy full SHA for 5de7ea5

  View code at this pointBrowse repository at this point

• Chromosome mapping tool patch for converting a genomic position to the position on mRNA for the genes leaving on the forward strand

  

  Yana Valasatava

  committed
  9a999c5View commit details

  Copy full SHA for 9a999c5

  View code at this pointBrowse repository at this point

Commits on Feb 23, 2017

• Bugfix: chromosome mapping tool returns -1 if position falls outside coding region on the forward strand

  

  Yana Valasatava

  committed
  b42fd90View commit details

  Copy full SHA for b42fd90

  View code at this pointBrowse repository at this point

Commits on Sep 21, 2016

• Merge branch 'master' of github.com:biojava/biojava

  Show description for c34385a
  andreasprlic

  committed
  c34385aView commit details

  Copy full SHA for c34385a

  View code at this pointBrowse repository at this point

• tiny javadoc improvements

  andreasprlic

  committed
  1937027View commit details

  Copy full SHA for 1937027

  View code at this pointBrowse repository at this point

Commits on Aug 28, 2016

• Merge pull request #567 from andviane/master

  Show description for 75a5f59
  josemduarte

  authored
  75a5f59View commit details

  Copy full SHA for 75a5f59

  View code at this pointBrowse repository at this point

Commits on Aug 25, 2016

• More tests for issue #355

  andviane

  committed
  b3142b9View commit details

  Copy full SHA for b3142b9

  View code at this pointBrowse repository at this point

• Pulling in the @josemduarte test case for issue #355

  andviane

  committed
  df1f905View commit details

  Copy full SHA for df1f905

  View code at this pointBrowse repository at this point

Commits on Aug 24, 2016

• Cleanup

  andviane

  committed
  220f9ffView commit details

  Copy full SHA for 220f9ff

  View code at this pointBrowse repository at this point

• Fix 355

  andviane

  committed
  b8f3a4cView commit details

  Copy full SHA for b8f3a4c

  View code at this pointBrowse repository at this point

Commits on Aug 18, 2016

• making output less verbose

  andreasprlic

  committed
  56e81e6View commit details

  Copy full SHA for 56e81e6

  View code at this pointBrowse repository at this point

• setting default log level to warn

  andreasprlic

  committed
  07f244aView commit details

  Copy full SHA for 07f244a

  View code at this pointBrowse repository at this point

Commits on Aug 10, 2016

• Merge branch 'bugfixes-4.2'

  Show description for ee2210b
  sbliven

  committed
  ee2210bView commit details

  Copy full SHA for ee2210b

  View code at this pointBrowse repository at this point

Commits on Jul 29, 2016

• new utility class for chromosome mappings.

  andreasprlic

  committed
  795be8fView commit details

  Copy full SHA for 795be8f

  View code at this pointBrowse repository at this point

• new utility class for chromosome mappings.

  andreasprlic

  committed
  04b8f4aView commit details

  Copy full SHA for 04b8f4a

  View code at this pointBrowse repository at this point

• new utility class for chromosome mappings.

  andreasprlic

  committed
  f2f4143View commit details

  Copy full SHA for f2f4143

  View code at this pointBrowse repository at this point