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Commits on Aug 4, 2015

• Allow non-refined result, only self-alignment

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• Fix demo issues

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Commits on Aug 3, 2015

• Add Demo for CeSymm

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Commits on Jul 24, 2015

• Fix bug with flexible MultipleAlignments

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Commits on Jul 22, 2015

• Calc.transform() documentation and testing

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Commits on Jul 20, 2015

• Core length used as the the min block length

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Commits on Jul 8, 2015

• Static methods for Jmol display methods, for consistency

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• Implement XML Converter and Parser for MultipleAlignments

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Commits on Jul 7, 2015

• Add more examples for the MultipleAlignment algorithm

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Commits on Jul 1, 2015

• Create Multiple Alignment GUI

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Commits on Jun 26, 2015

• Important bug fix in the insertGap() move of MC

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• Smooth probability function in MC optimization

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Commits on Jun 25, 2015

• Clean Demos for Multiple Alignments

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• Create templates for MultipleAlignment CLI #278

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Commits on Jun 23, 2015

• Fix updateSuperposition() bug with Transformation Matrices

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Commits on Jun 22, 2015

• Create Test templates for MultipleAlignment

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Commits on Jun 19, 2015

• Improvements in CEMC score and algorithm

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Commits on Jun 18, 2015

• Update CEMC algorithm to support gaps

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• Fix Bugs in MultipleAlignment DS

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Commits on Jun 17, 2015

• Implement BlockSet flexible superposition #278

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Commits on Jun 16, 2015

• Merge pull request #278 from sbliven/multaln

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• Tests for MultipleAlignment scores and AFP conversion

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Commits on Jun 15, 2015

• Remove and replace StructureAlignmentException

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• Re-Structure MultipleAlignment code for scores and display

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• Alignment Panel for MultipleAlignment complete

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Commits on Jun 12, 2015

• MultipleAlignmentWriter with FASTA conversion

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Commits on Jun 10, 2015

• Method to transform Atom[] arrays in Calc

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Commits on Jun 9, 2015

• Fix buf with AFPChain to MultipleAlignment conversion

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• Move code to align.multiple package and rename classes #278

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• Fix bug with 4D Transformation Calc

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Commits on Jun 5, 2015

• Fixing compilation errors

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Commits on May 29, 2015

• Merge remote-tracking branch 'lafita/multaln' into multaln

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Commits on May 27, 2015

• Connect MultipleAlignment AligPanel and Jmol

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Commits on May 26, 2015

• Restore the AligPanel for AFPChain

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Commits on May 22, 2015

• Add new families to the CEMC demo

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