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Genes with internal stop codons predicted from ambiguous bases

enhancementNew feature or requestNew feature or request

Status: Open.

#80 In althonos/pyrodigal;

· JeanMainguy opened on Mar 6, 2026

Add RBS feature line

enhancementNew feature or requestNew feature or request

Status: Open.

#78 In althonos/pyrodigal;

· tseemann opened on Jan 9, 2026

Pyrodigal misses a valid CDS in the input FASTA file

externalIssue comes from a dependency or some external code.Issue comes from a dependency or some external code.

Status: Open.

#75 In althonos/pyrodigal;

· hbucqp opened on Dec 4, 2025

Incorporating a pyrrolysine-encoding translation table (34) into pyrodigal

enhancementNew feature or requestNew feature or request

Status: Open.

#74 In althonos/pyrodigal;

· apcamargo opened on Nov 27, 2025

corresponding ORF not called in different isolates despite identical sequence

externalIssue comes from a dependency or some external code.Issue comes from a dependency or some external code.

Status: Open.

#68 In althonos/pyrodigal;

· 0xaf1f opened on Dec 28, 2024

Support for circular sequences

enhancementNew feature or requestNew feature or request

Status: Open.

#67 In althonos/pyrodigal;

· apcamargo opened on Dec 13, 2024

support detection of RBS across linear chromosome breakpoint ?

enhancementNew feature or requestNew feature or request

Status: Open.

#65 In althonos/pyrodigal;

· gbouras13 opened on Dec 11, 2024

Enforce start codon in pyrodigal ORF prediction

enhancementNew feature or requestNew feature or request

Status: Open.

#64 In althonos/pyrodigal;

· LanderDC opened on Dec 4, 2024

add ORGANISM label to GBK output

questionFurther information is requestedFurther information is requested

Status: Open.

#45 In althonos/pyrodigal;

· GeoMicroSoares opened on Sep 27, 2023

selenoproteins?

questionFurther information is requestedFurther information is requested

Status: Open.

#43 In althonos/pyrodigal;

· mallen6 opened on Sep 15, 2023

different result comparing to prodigal

questionFurther information is requestedFurther information is requested

Status: Open.

#42 In althonos/pyrodigal;

· zzsunday opened on Sep 4, 2023

Inconsistent start score computed for some genes

bugSomething isn't workingSomething isn't working

Status: Open.

#19 In althonos/pyrodigal;

· althonos opened on Oct 21, 2022