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Commits on Jul 10, 2018

• Clean up outdated TODO notes

  maaskola

  committed
  bb38bee

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• Remove unused code

  maaskola

  committed
  e32fce2

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Commits on May 27, 2018

• Remove unused contributions sampling code

  maaskola

  committed
  08777c3

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Commits on May 8, 2018

• Polymorphic coefficient types; drop index vectors

  maaskola

  committed
  7fb75b0

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Commits on Mar 30, 2018

• Drop remaining lBFGS code

  maaskola

  committed
  4059e7c

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Commits on Mar 12, 2018

• Drop unused code

  maaskola

  committed
  996f043

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Commits on Dec 31, 2017

• Optionally match read/spot ratio by down-sampling

  maaskola

  committed
  40dcf70

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• Print out read statistics

  maaskola

  committed
  09e6b09

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Commits on Dec 7, 2017

• Adjust verbosity

  maaskola

  committed
  f095615

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Commits on Nov 27, 2017

• Remove de-activated code

  maaskola

  committed
  3f12af8

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Commits on Nov 26, 2017

• Ensure that covariate dimensions are as expected

  maaskola

  committed
  9465b60

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• Binomial read count downsampling

  maaskola

  committed
  716a604

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Commits on Nov 14, 2017

• Partially re-activate Experiment::store()

  maaskola

  committed
  153feeb

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Commits on Nov 13, 2017

• Add support for general equations

  ludvb

  committed
  b516580

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Commits on Oct 10, 2017

• Increase variance of candidate generation in MH

  maaskola

  committed
  3cd83ee

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Commits on Oct 5, 2017

• Fix: Metropolis-Hastings contribution sampling

  maaskola

  committed
  5fe5d5e

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• Annotate return types of lambda functions

  maaskola

  committed
  c955ae7

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Commits on Sep 27, 2017

• Do contribution sampling using Metropolis-Hastings

  maaskola

  committed
  d12a56d

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Commits on Sep 19, 2017

• Drop Coefficient::Variable

  ludvb

  committed
  dd29d62

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Commits on Sep 16, 2017

• Drop unused code and parameters

  maaskola

  committed
  f1e1e85

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Commits on Sep 3, 2017

• Drop unused member

  maaskola

  committed
  c4faa1f

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Commits on Aug 28, 2017

• Drop large amount of code for fields

  maaskola

  committed
  d4d5532

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• No fields in size() vectorize() from_vector()

  maaskola

  committed
  b3f9ceb

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• Remove former sampling code

  maaskola

  committed
  f4e516a

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• Additional sampling routines

  maaskola

  committed
  155f642

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Commits on Aug 19, 2017

• Write out experiment rate and odds matrices

  maaskola

  committed
  63c6ec6

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Commits on Aug 17, 2017

• Templatize return type

  maaskola

  committed
  f1d2660

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• Drop unused source code

  maaskola

  committed
  c8bb133

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Commits on Aug 7, 2017

• Introduce class for Gaussian processes

  maaskola

  committed
  1433ad4

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Commits on Aug 4, 2017

• First draft for Gaussian processes

  maaskola

  committed
  370dab4

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Commits on Aug 3, 2017

• CLI choice for distribution defaults

  maaskola

  committed
  a0d371c

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• Avoid shadowing of member

  maaskola

  committed
  02a4e4f

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Commits on Aug 2, 2017

• Move compute_*_type_table back to Experiment

  maaskola

  committed
  c97c7da

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• Bring back separate members for rate and odds idxs

  maaskola

  committed
  9fcee92

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Commits on Jul 31, 2017

• Prefer odds over negative odds

  maaskola

  committed
  35d97eb

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