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biojava--biojava
biojava-structure
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java9
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Commits on Sep 7, 2018
Explicit jaxb dependencies so that biojava can compile/run in all jdks up to 11
josemduarte
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44176e9
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Merge branch 'master' into java9
josemduarte
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Commits on Sep 5, 2018
Change download chemcomp log to WARN
lafita
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Commits on Aug 29, 2018
[maven-release-plugin] prepare for next development iteration
josemduarte
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[maven-release-plugin] prepare release biojava-5.1.0
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Not altering the exceptions in signature, keeping what we had with better logging
josemduarte
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Fixing #784
josemduarte
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Commits on Aug 28, 2018
Fixed part of a test and tagged it as Ignore
josemduarte
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Fixing issue #797 and better docs and naming
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Commits on Aug 24, 2018
Merge pull request #794 from biocryst/stoichiometry
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Merge pull request #793 from biocryst/smallfixes
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Commits on Aug 21, 2018
transformation ordering fix: total order required for the comparator
Dmytro Guzenko
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f4ebf9f
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fix for cloning with null seqres groups
Dmytro Guzenko
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463ef0c
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Commits on Aug 16, 2018
Logger string formatting changed to brackets (faster execution).
Dmytro Guzenko
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a6012cd
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Commits on Jul 29, 2018
Code Refactoring to minimize dublicate code
MikkelVestergaard
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Merge branch 'issue712'
MikkelVestergaard
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Commits on Jul 28, 2018
Implemented bond-cloning in group-elements
MikkelVestergaard
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Commits on Jul 13, 2018
Merge branch 'master' into more-altloc-problems
josemduarte
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Implementing @sbliven suggestions
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Switch ftp.ebi.ac.uk URLs to use HTTP.
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sbliven
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josemduarte
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Commits on Jun 25, 2018
Docs
josemduarte
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1d4d597
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Commits on Jun 24, 2018
Fixing issue with duplicate altlocs in writing to mmcif. Improved docs.
josemduarte
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Some fixes in altloc test and 2 additions
josemduarte
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Commits on Jun 18, 2018
Make BioJava compile under java9
sbliven
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0a3d660
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Commits on Jun 15, 2018
Fix test failure due to PDB change
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sbliven
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Commits on Jun 8, 2018
Merge branch 'bugfixes-4.2'
sbliven
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Commits on Jun 4, 2018
Improving CathInstallation logging
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sbliven
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Commits on May 22, 2018
Next dev cycle for master
josemduarte
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Commits on May 21, 2018
Fix for #770, use LinkedHashMaps to keep order of biological assembly
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pwrose
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Commits on May 16, 2018
Revert "Fixes #771, commented out test case that fails due to PDB data error."
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Fixes #770, bioassemblies are now kept in the same order as read in from
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pwrose
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Fixes #771, commented out test case that fails due to PDB data error.
pwrose
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Commits on May 11, 2018
[maven-release-plugin] prepare for next development iteration
josemduarte
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4140859
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[maven-release-plugin] prepare release biojava-5.0.1
josemduarte
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Converting some old loggers to slf4j. Clean up.
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Dmytro Guzenko