Commits

History for

Commits on Mar 14, 2018

Merge pull request #749 from josemduarte/removeV4deprecations
josemduarte
authored
763f7ec
Add license to all files
sbliven
committed
0e8c081

Commits on Mar 12, 2018

Removing deprecations from v4
josemduarte
committed
9dbf83c

Commits on Mar 9, 2018

Added moved note and cleaned up unused variable and some docs
josemduarte
committed
a61fb75

Commits on Mar 7, 2018

Merging sequencing module into genome module as per #536
josemduarte
committed
59fd363

Commits on Oct 3, 2017

Updating genenames.org url to https
josemduarte
committed
39d8c24

Commits on Aug 15, 2017

improvements
valasatava
committed
3e2be54
Setter for chromosome coordinate systems: 0-based, 1-based
valasatava
committed
b69ddfb
CDS length calculation bug fix
valasatava
committed
033d92e

Commits on Apr 11, 2017

Merge branch 'master' of https://github.com/valasatava/biojava
valasatava
committed
4e20a41

Commits on Apr 7, 2017

Work with assemble hg19 or hg37 keyword
valasatava
committed
31333af
Get CDS ranges patch
valasatava
committed
b925bf9

Commits on Apr 5, 2017

Get CDS ranges patch
valasatava
committed
ece5062

Commits on Apr 4, 2017

TwoBitFile geneAssembly fix
valasatava
committed
2de5a12
A class to download .2bit file
valasatava
committed
bce7fed
Refactoring FileDownload util to be a part of biojava-core project
valasatava
committed
3cefc3f

Commits on Apr 3, 2017

proxy for convertDNAtoProteinSequence
valasatava
committed
d26e861

Commits on Mar 28, 2017

.2bit parser facade added
valasatava
committed
d502469

Commits on Mar 23, 2017

Fix for orientation value: compare to Character, not to String
Yana Valasatava
committed
1f3a6dc

Commits on Mar 21, 2017

Changes required for Extracting protein sequence for genetic positions #642 pull request
Yana Valasatava
committed
ef3b83a

Commits on Mar 20, 2017

Class to extract protein sequence from genetic positions
Yana Valasatava
committed
4d00cd6

Commits on Feb 24, 2017

Chromosome mapping tool patch for converting a genomic position to the position on mRNA for the genes leaving on the forward strand
Yana Valasatava
committed
9a999c5

Commits on Feb 23, 2017

Bugfix: chromosome mapping tool returns -1 if position falls outside coding region on the forward strand
Yana Valasatava
committed
b42fd90

Commits on Sep 21, 2016

Merge branch 'master' of github.com:biojava/biojava
andreasprlic
committed
c34385a
tiny javadoc improvements
andreasprlic
committed
1937027

Commits on Aug 25, 2016

More tests for issue #355
andviane
committed
b3142b9

Commits on Aug 24, 2016

Cleanup
andviane
committed
220f9ff
Fix 355
andviane
committed
b8f3a4c

Commits on Aug 10, 2016

Merge branch 'bugfixes-4.2'
sbliven
committed
ee2210b

Commits on Jul 29, 2016

new utility class for chromosome mappings.
andreasprlic
committed
795be8f
new utility class for chromosome mappings.
andreasprlic
committed
04b8f4a
new utility class for chromosome mappings.
andreasprlic
committed
f2f4143

Commits on Jul 27, 2016

#534 moving the getHTML methods out of BioJava
andreasprlic
committed
269855a
#534 renaming method names, according to @joseduarte 's comments
andreasprlic
committed
aba6ed8
#534 addressing @joseduarte 's comments
andreasprlic
committed
d01e01e