Commits

History for

Commits on Mar 29, 2016

Ugly, basic MMTF support in AtomCache
sbliven
committed
3f94fe5

Commits on Mar 22, 2016

Update the decoder to work with the new interface
abradle
committed
26ff03d
Develop off the snaspshot.
abradle
committed
9b4ad9a

Commits on Mar 21, 2016

Merge remote-tracking branch 'fork/mmtf' into alt_loc_bonds
abradle
committed
14e8b74
Merge remote-tracking branch 'fork/entity_features' into alt_loc_bonds
abradle
committed
9948dc0
Alternate locations now contain all atoms in a group.
abradle
committed
c1ea01e

Commits on Mar 17, 2016

Upstream refactoring of mmtf specification
abradle
committed
74846cd
Updates to the biojava structure decoder due to an API change in the interrface
abradle
committed
affb82b
Added a fairly poor and basic test
abradle
committed
41a0e00
Updates to for the new mmtf format
abradle
committed
b267a8a
Minor
abradle
committed
bc43d6d
Added a new MMTF parsing module in biojava
abradle
committed
d95742d

Commits on Mar 14, 2016

Updates to the Biojava code to include imporved handling of Entity information.
abradle
committed
07e1b1c

Commits on Mar 12, 2016

Fixed a bug where nucleotide bonds were not being generated. Added a test to ensure nucleotide bonds are being generated.
abradle
committed
44b3e4c

Commits on Mar 10, 2016

Commits on Mar 9, 2016

Merge branch 'master' into removeLoadChemCompInfo
josemduarte
committed
d1b5c48
Docs
josemduarte
committed
72ccbbe
Fixing issues with bonds in 3th3 and better logging
josemduarte
committed
a50248e
More whitespace fixes
sbliven
committed
af59f90
Automatically adding missing @Override
sbliven
committed
d29b8f3
Converting initial spaces to tabs.
sbliven
committed
2417c23
Removing template messages
sbliven
committed
2bb0271
Remove trailing whitespace globally from .java files
sbliven
committed
809312e
Running addlicense.sh
sbliven
committed
f4e725f
Better docs for new FileParsingParam
josemduarte
committed
9680441
Better docs and an empty test
josemduarte
committed
35ff5a4
Merge remote-tracking branch 'upstream/master' into removeLoadChemCompInfo
josemduarte
committed
892c03d
Merge pull request #427 from abradle/master
josemduarte
committed
b6b0525
Merge branch 'master' into removeLoadChemCompInfo
josemduarte
committed
832f106

Commits on Mar 8, 2016

Fixing a few bugs that arose after loadChemCompInfo removal, #426
josemduarte
committed
8da9d07
Fix PDBFileParser bug with missing trailing spaces.
sbliven
committed
1fe46b4
Fixed DBRef#toPDB() method to give 80 characters line

sroughley
authored and
sbliven
committed
716780a