Commits

History for

onbiojava-7.2.0

Commits on Jan 7, 2025

Javadoc fix: errors in genome module
josemduarte
committed
3580f7b

Commits on Jan 3, 2025

Javadoc fix: html-like tag not allowed
josemduarte
committed
d104809

Commits on May 15, 2024

Fix issue s1319 Declarations should use Java collection interfaces on biojava-core
jlerbsc
committed
1ae6b52

Commits on Apr 18, 2024

Fix sonar issue S2293 Replace the type specification in this constructor call with the diamond operator ('<>')
jlerbsc
committed
b182121

Commits on Mar 5, 2024

fix sonar issue 2629 Logging arguments should not require evaluation
jlerbsc
committed
1ac29b3

Commits on Feb 26, 2024

fix: issue #1081 Sonar S1132 Strings literals should be placed on the left side when checking for equality
jlerbsc
committed
ac75f31

Commits on Jun 30, 2023

Merge remote-tracking branch 'origin/master'
josemduarte
committed
4796663
Try-with from sonar
josemduarte
committed
d0fa313
Try-with from sonar and main cleanup
josemduarte
committed
6820ce6

Commits on Jun 27, 2023

Sonar S2129 Constructors should not be used to instantiate 'String', 'BigInteger', 'BigDecimal' and primitive-wrapper classes (Issue #1066)
jlerbsc
committed
4a1863d

Commits on May 7, 2023

Sonar S4973 '==' and '!=' should not be used when 'equals' is overridden #1052
Pavan Kumar, Thummuru
committed
caa5789

Commits on Apr 16, 2023

Sonar S4973 '==' and '!=' should not be used when 'equals' is overridden #1052
tmrpavan
committed
963dc01

Commits on Feb 1, 2022

Removing a utility tool that was really internal to biojava, but that was using external resources that are now gone.
josemduarte
committed
0e47572

Commits on Feb 22, 2021

Add copy constructor to FastqBuilder.
heuermh
committed
02b0ece
Collect to ArrayList rather than LinkedList.
heuermh
committed
1e59bb5

Commits on Sep 17, 2020

Remove unused import
jean-philippe-martin
committed
f8148e9
Add Javadoc to the overload
jean-philippe-martin
committed
ac475b7
Add GFF3Reader overload that accepts Path
jean-philippe-martin
committed
35594ef

Commits on Apr 30, 2020

Fixed impact of refactoring on genome module
paolopavan
committed
8040e39

Commits on Jan 3, 2019

Manually fix cases of space indentation identation found by
sbliven
committed
5baab5e
Automatically convert spaces to tabs
sbliven
committed
9ae2c4f
Remove trailing spaces from java files
sbliven
committed
405b005

Commits on Jan 2, 2019

Merge branch 'bugfixes-4.2'
sbliven
committed
0501615

Commits on Mar 14, 2018

Merge pull request #749 from josemduarte/removeV4deprecations
josemduarte
authored
763f7ec
Add license to all files
sbliven
committed
0e8c081

Commits on Mar 12, 2018

Removing deprecations from v4
josemduarte
committed
9dbf83c

Commits on Mar 9, 2018

Added moved note and cleaned up unused variable and some docs
josemduarte
committed
a61fb75

Commits on Mar 7, 2018

Merging sequencing module into genome module as per #536
josemduarte
committed
59fd363

Commits on Oct 3, 2017

Updating genenames.org url to https
josemduarte
committed
97ca0c1
Updating genenames.org url to https
josemduarte
committed
39d8c24

Commits on Aug 15, 2017

improvements
valasatava
committed
3e2be54
Setter for chromosome coordinate systems: 0-based, 1-based
valasatava
committed
b69ddfb
CDS length calculation bug fix
valasatava
committed
033d92e

Commits on Apr 11, 2017

Merge branch 'master' of https://github.com/valasatava/biojava
valasatava
committed
4e20a41

Commits on Apr 7, 2017

Work with assemble hg19 or hg37 keyword
valasatava
committed
31333af