Import scipy.ndimage functions directly (drop removed measurements na… - #3406
Merged
C-Achard merged 1 commit intoJul 16, 2026
Conversation
…mespace) predict_multianimal.py imported 'from scipy.ndimage import measurements'. The scipy.ndimage.measurements submodule was deprecated in scipy 1.8 and removed in scipy 1.14; since the project pins scipy>=1.9 with no upper bound, a fresh install resolves a scipy where this import raises ImportError at module load. Because the module is imported at the top of the TensorFlow multi-animal inference path, analyze_videos on a TF maDLC project failed immediately on import. Import label and center_of_mass directly from scipy.ndimage (their canonical public location) and call them without the measurements prefix.
deruyter92
approved these changes
Jul 16, 2026
9 tasks
C-Achard
merged commit Jul 16, 2026
cffb979
into
DeepLabCut:external/hwang-misc-fixes
10 checks passed
This file contains hidden or bidirectional Unicode text that may be interpreted or compiled differently than what appears below. To review, open the file in an editor that reveals hidden Unicode characters.
Learn more about bidirectional Unicode characters
Sign up for free
to join this conversation on GitHub.
Already have an account?
Sign in to comment
Add this suggestion to a batch that can be applied as a single commit.This suggestion is invalid because no changes were made to the code.Suggestions cannot be applied while the pull request is closed.Suggestions cannot be applied while viewing a subset of changes.Only one suggestion per line can be applied in a batch.Add this suggestion to a batch that can be applied as a single commit.Applying suggestions on deleted lines is not supported.You must change the existing code in this line in order to create a valid suggestion.Outdated suggestions cannot be applied.This suggestion has been applied or marked resolved.Suggestions cannot be applied from pending reviews.Suggestions cannot be applied on multi-line comments.Suggestions cannot be applied while the pull request is queued to merge.Suggestion cannot be applied right now. Please check back later.
…mespace)
predict_multianimal.py imported 'from scipy.ndimage import measurements'. The scipy.ndimage.measurements submodule was deprecated in scipy 1.8 and removed in scipy 1.14; since the project pins scipy>=1.9 with no upper bound, a fresh install resolves a scipy where this import raises ImportError at module load. Because the module is imported at the top of the TensorFlow multi-animal inference path, analyze_videos on a TF maDLC project failed immediately on import.
Import label and center_of_mass directly from scipy.ndimage (their canonical public location) and call them without the measurements prefix.