Skip to content

Add Cookbook recipe: fish swimming kinematics from DeepLabCut - #3398

Open
Denny-Hwang wants to merge 2 commits into
DeepLabCut:mainfrom
Denny-Hwang:claude/cookbook-fish-swimming-kinematics
Open

Add Cookbook recipe: fish swimming kinematics from DeepLabCut#3398
Denny-Hwang wants to merge 2 commits into
DeepLabCut:mainfrom
Denny-Hwang:claude/cookbook-fish-swimming-kinematics

Conversation

@Denny-Hwang

Copy link
Copy Markdown
Contributor

Adds a post-processing recipe showing how to derive swimming-kinematics metrics (tail-beat frequency, swimming speed, body curvature, diel index) from single-animal DeepLabCut pose tracks, and how to use the Spearman-Brown reliability index to choose a reliable observation duration. Registers the page in the docs table of contents.

Adapted from Hwang et al. 2026, Ecological Informatics 95, 103760.

Adds a post-processing recipe showing how to derive swimming-kinematics
metrics (tail-beat frequency, swimming speed, body curvature, diel index)
from single-animal DeepLabCut pose tracks, and how to use the
Spearman-Brown reliability index to choose a reliable observation
duration. Registers the page in the docs table of contents.

Adapted from Hwang et al. 2026, Ecological Informatics 95, 103760.
@C-Achard C-Achard added documentation documentation updates/comments community-contribution Separate workflow/code contributed by DLC users: can be external notebooks, codes, repos, guides... labels Jul 15, 2026
Sign up for free to join this conversation on GitHub. Already have an account? Sign in to comment

Labels

community-contribution Separate workflow/code contributed by DLC users: can be external notebooks, codes, repos, guides... documentation documentation updates/comments

Projects

None yet

Development

Successfully merging this pull request may close these issues.

5 participants