Skip to content

Commit eaa3f73

Browse files
emckee2006emckee2006
committed
Merge pull request biojava#39 from biojava/master
Catch back up with biojava/master
2 parents 752a122 + 8676f44 commit eaa3f73

File tree

42 files changed

+624
-312
lines changed

Some content is hidden

Large Commits have some content hidden by default. Use the searchbox below for content that may be hidden.

42 files changed

+624
-312
lines changed

‎biojava-aa-prop/pom.xml‎

Lines changed: 8 additions & 0 deletions
Original file line numberDiff line numberDiff line change
@@ -9,6 +9,14 @@
99
<name>biojava-aa-prop</name>
1010
<url>http://www.biojava.org</url>
1111

12+
<licenses>
13+
<license>
14+
<name>GNU LGPL v2</name>
15+
<url>http://www.gnu.org/licenses/old-licenses/lgpl-2.1.txt</url>
16+
<distribution>repo</distribution>
17+
</license>
18+
</licenses>
19+
1220
<build>
1321
<plugins>
1422
<plugin>

‎biojava-alignment/pom.xml‎

Lines changed: 9 additions & 1 deletion
Original file line numberDiff line numberDiff line change
@@ -9,7 +9,15 @@
99
<artifactId>biojava-alignment</artifactId>
1010
<name>biojava-alignment</name>
1111

12-
<url>http://maven.apache.org</url>
12+
<licenses>
13+
<license>
14+
<name>GNU LGPL v2</name>
15+
<url>http://www.gnu.org/licenses/old-licenses/lgpl-2.1.txt</url>
16+
<distribution>repo</distribution>
17+
</license>
18+
</licenses>
19+
20+
<url>http://www.biojava.org</url>
1321
<properties>
1422
<project.build.sourceEncoding>UTF-8</project.build.sourceEncoding>
1523
</properties>

‎biojava-core/pom.xml‎

Lines changed: 9 additions & 0 deletions
Original file line numberDiff line numberDiff line change
@@ -13,6 +13,15 @@
1313
<name>BioJava</name>
1414
<url>http://www.biojava.org</url>
1515
</organization>
16+
17+
<licenses>
18+
<license>
19+
<name>GNU LGPL v2</name>
20+
<url>http://www.gnu.org/licenses/old-licenses/lgpl-2.1.txt</url>
21+
<distribution>repo</distribution>
22+
</license>
23+
</licenses>
24+
1625
<build>
1726
<plugins>
1827
<plugin>

‎biojava-genome/pom.xml‎

Lines changed: 9 additions & 0 deletions
Original file line numberDiff line numberDiff line change
@@ -8,6 +8,15 @@
88
<modelVersion>4.0.0</modelVersion>
99
<artifactId>biojava-genome</artifactId>
1010
<name>biojava-genome</name>
11+
12+
<licenses>
13+
<license>
14+
<name>GNU LGPL v2</name>
15+
<url>http://www.gnu.org/licenses/old-licenses/lgpl-2.1.txt</url>
16+
<distribution>repo</distribution>
17+
</license>
18+
</licenses>
19+
1120
<repositories>
1221
<repository>
1322
<id>biojava-maven-repo</id>

‎biojava-integrationtest/pom.xml‎

Lines changed: 9 additions & 1 deletion
Original file line numberDiff line numberDiff line change
@@ -10,6 +10,15 @@
1010
<packaging>jar</packaging>
1111
<name>biojava-integrationtest</name>
1212
<url>http://www.biojava.org</url>
13+
14+
<licenses>
15+
<license>
16+
<name>GNU LGPL v2</name>
17+
<url>http://www.gnu.org/licenses/old-licenses/lgpl-2.1.txt</url>
18+
<distribution>repo</distribution>
19+
</license>
20+
</licenses>
21+
1322
<properties>
1423
<project.build.sourceEncoding>UTF-8</project.build.sourceEncoding>
1524
<project.build.targetEncoding>UTF-8</project.build.targetEncoding>
@@ -54,7 +63,6 @@ mvn verify</description>
5463
<plugins>
5564
<plugin>
5665
<artifactId>maven-failsafe-plugin</artifactId>
57-
<version>2.14.1</version>
5866
<executions>
5967
<execution>
6068
<goals>

‎biojava-modfinder/pom.xml‎

Lines changed: 9 additions & 0 deletions
Original file line numberDiff line numberDiff line change
@@ -9,6 +9,15 @@
99
<artifactId>biojava-modfinder</artifactId>
1010
<name>biojava-modfinder</name>
1111
<url>http://www.biojava.org</url>
12+
13+
<licenses>
14+
<license>
15+
<name>GNU LGPL v2</name>
16+
<url>http://www.gnu.org/licenses/old-licenses/lgpl-2.1.txt</url>
17+
<distribution>repo</distribution>
18+
</license>
19+
</licenses>
20+
1221
<properties>
1322
<project.build.sourceEncoding>UTF-8</project.build.sourceEncoding>
1423
<project.build.targetEncoding>UTF-8</project.build.targetEncoding>

‎biojava-ontology/pom.xml‎

Lines changed: 10 additions & 3 deletions
Original file line numberDiff line numberDiff line change
@@ -9,8 +9,16 @@
99

1010
<artifactId>biojava-ontology</artifactId>
1111
<name>biojava-ontology</name>
12-
<url>http://maven.apache.org</url>
13-
12+
<url>http://www.biojava.org</url>
13+
14+
<licenses>
15+
<license>
16+
<name>GNU LGPL v2</name>
17+
<url>http://www.gnu.org/licenses/old-licenses/lgpl-2.1.txt</url>
18+
<distribution>repo</distribution>
19+
</license>
20+
</licenses>
21+
1422
<dependencies>
1523
<dependency>
1624
<groupId>junit</groupId>
@@ -60,7 +68,6 @@
6068
<plugin>
6169
<groupId>org.apache.maven.plugins</groupId>
6270
<artifactId>maven-resources-plugin</artifactId>
63-
<version>2.5</version>
6471
</plugin>
6572

6673
</plugins>

‎biojava-phylo/pom.xml‎

Lines changed: 9 additions & 0 deletions
Original file line numberDiff line numberDiff line change
@@ -10,6 +10,15 @@
1010
<name>biojava-phylo</name>
1111

1212
<url>http://www.biojava.org</url>
13+
14+
<licenses>
15+
<license>
16+
<name>GNU LGPL v2</name>
17+
<url>http://www.gnu.org/licenses/old-licenses/lgpl-2.1.txt</url>
18+
<distribution>repo</distribution>
19+
</license>
20+
</licenses>
21+
1322
<build>
1423
<plugins>
1524
<plugin>

‎biojava-protein-comparison-tool/pom.xml‎

Lines changed: 12 additions & 6 deletions
Original file line numberDiff line numberDiff line change
@@ -5,13 +5,20 @@
55
<parent>
66
<artifactId>biojava</artifactId>
77
<groupId>org.biojava</groupId>
8-
<version>4.0.1-SNAPSHOT</version>
8+
<version>4.1.1-SNAPSHOT</version>
99
</parent>
1010

1111
<artifactId>biojava-protein-comparison-tool</artifactId>
1212
<packaging>jar</packaging>
1313
<name>biojava-protein-comparison-tool</name>
1414
<url>http://source.rcsb.org</url>
15+
<licenses>
16+
<license>
17+
<name>GNU LGPL v2</name>
18+
<url>http://www.gnu.org/licenses/old-licenses/lgpl-2.1.txt</url>
19+
<distribution>repo</distribution>
20+
</license>
21+
</licenses>
1522
<properties>
1623
<project.build.sourceEncoding>UTF-8</project.build.sourceEncoding>
1724
<project.build.targetEncoding>UTF-8</project.build.targetEncoding>
@@ -30,23 +37,23 @@
3037
<dependency>
3138
<groupId>org.biojava</groupId>
3239
<artifactId>biojava-alignment</artifactId>
33-
<version>4.1.0-SNAPSHOT</version>
40+
<version>4.1.1-SNAPSHOT</version>
3441

3542
</dependency>
3643
<dependency>
3744
<groupId>org.biojava</groupId>
3845
<artifactId>biojava-core</artifactId>
39-
<version>4.1.0-SNAPSHOT</version>
46+
<version>4.1.1-SNAPSHOT</version>
4047
</dependency>
4148
<dependency>
4249
<groupId>org.biojava</groupId>
4350
<artifactId>biojava-structure</artifactId>
44-
<version>4.1.0-SNAPSHOT</version>
51+
<version>4.1.1-SNAPSHOT</version>
4552
</dependency>
4653
<dependency>
4754
<groupId>org.biojava</groupId>
4855
<artifactId>biojava-structure-gui</artifactId>
49-
<version>4.1.0-SNAPSHOT</version>
56+
<version>4.1.1-SNAPSHOT</version>
5057
</dependency>
5158
<dependency>
5259
<groupId>net.sourceforge.jmol</groupId>
@@ -167,7 +174,6 @@
167174
<plugin>
168175
<groupId>org.codehaus.mojo</groupId>
169176
<artifactId>buildnumber-maven-plugin</artifactId>
170-
<version>1.3</version>
171177
<executions>
172178
<execution>
173179
<phase>validate</phase>

‎biojava-protein-disorder/pom.xml‎

Lines changed: 7 additions & 0 deletions
Original file line numberDiff line numberDiff line change
@@ -9,6 +9,13 @@
99
<packaging>jar</packaging>
1010
<name>biojava-protein-disorder</name>
1111
<description>This module is for predicting disordered regions in protein sequences</description>
12+
<licenses>
13+
<license>
14+
<name>GNU LGPL v2</name>
15+
<url>http://www.gnu.org/licenses/old-licenses/lgpl-2.1.txt</url>
16+
<distribution>repo</distribution>
17+
</license>
18+
</licenses>
1219
<build>
1320
<plugins>
1421
<plugin>

0 commit comments

Comments
 (0)