Changes for CONECT/LINK

larsonmattr · larsonmattr · commit e88637c530a8 · 2017-10-18T13:16:40.000-05:00
diff --git a/biojava-structure/src/main/java/org/biojava/nbio/structure/io/PDBFileParser.java b/biojava-structure/src/main/java/org/biojava/nbio/structure/io/PDBFileParser.java
@@ -2750,7 +2750,7 @@ else if ( params.isParseSecStruc()) {
 					else if (recordName.equals("TURN")) pdb_TURN_Handler(   line ) ;
 				}
 			} catch (StringIndexOutOfBoundsException ex) {
-				logger.info("Unable to parse [" + line + "]");
+				logger.warn("Unable to parse [" + line + "]");
 			}
 
 
diff --git a/biojava-structure/src/test/java/org/biojava/nbio/structure/io/TestShortLines.java b/biojava-structure/src/test/java/org/biojava/nbio/structure/io/TestShortLines.java
@@ -14,9 +14,6 @@
 
 /**
  * This class will test parsing short CONECT lines.
- * <p>(c) 2016 DNASTAR, Inc.</p>
- * @since Nov 30, 2016
- * @author larsonm
  */
 public class TestShortLines {
 	

Original file line number	Diff line number	Diff line change
`@@ -2750,7 +2750,7 @@ else if ( params.isParseSecStruc()) {`
`2750`	`2750`	`else if (recordName.equals("TURN")) pdb_TURN_Handler( line ) ;`
`2751`	`2751`	`}`
`2752`	`2752`	`} catch (StringIndexOutOfBoundsException ex) {`
`2753`		`- logger.info("Unable to parse [" + line + "]");`
	`2753`	`+ logger.warn("Unable to parse [" + line + "]");`
`2754`	`2754`	`}`
`2755`	`2755`
`2756`	`2756`