ws-java
diff --git a/‎biojava-aa-prop/src/main/java/org/biojava/nbio/aaproperties/xml/MyValidationEventHandler.java‎
Lines changed: 1 addition & 1 deletion b/‎biojava-aa-prop/src/main/java/org/biojava/nbio/aaproperties/xml/MyValidationEventHandler.java‎
Lines changed: 1 addition & 1 deletion
diff --git a/‎biojava-aa-prop/src/main/java/org/biojava/nbio/aaproperties/xml/Name2Count.java‎
Lines changed: 1 addition & 1 deletion b/‎biojava-aa-prop/src/main/java/org/biojava/nbio/aaproperties/xml/Name2Count.java‎
Lines changed: 1 addition & 1 deletion
diff --git a/‎biojava-alignment/src/main/java/demo/CookbookMSA.java‎
Lines changed: 1 addition & 1 deletion b/‎biojava-alignment/src/main/java/demo/CookbookMSA.java‎
Lines changed: 1 addition & 1 deletion
diff --git a/‎biojava-alignment/src/main/java/demo/DemoAlignProteins.java‎
Lines changed: 1 addition & 1 deletion b/‎biojava-alignment/src/main/java/demo/DemoAlignProteins.java‎
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diff --git a/‎biojava-alignment/src/main/java/org/biojava/nbio/alignment/io/StockholmConsensusAnnotation.java‎
Lines changed: 1 addition & 1 deletion b/‎biojava-alignment/src/main/java/org/biojava/nbio/alignment/io/StockholmConsensusAnnotation.java‎
Lines changed: 1 addition & 1 deletion
diff --git a/‎biojava-alignment/src/main/java/org/biojava/nbio/alignment/io/StockholmFileAnnotation.java‎
Lines changed: 1 addition & 1 deletion b/‎biojava-alignment/src/main/java/org/biojava/nbio/alignment/io/StockholmFileAnnotation.java‎
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diff --git a/‎biojava-alignment/src/main/java/org/biojava/nbio/alignment/io/StockholmResidueAnnotation.java‎
Lines changed: 1 addition & 1 deletion b/‎biojava-alignment/src/main/java/org/biojava/nbio/alignment/io/StockholmResidueAnnotation.java‎
Lines changed: 1 addition & 1 deletion
diff --git a/‎biojava-alignment/src/main/java/org/biojava/nbio/alignment/io/StockholmSequenceAnnotation.java‎
Lines changed: 1 addition & 1 deletion b/‎biojava-alignment/src/main/java/org/biojava/nbio/alignment/io/StockholmSequenceAnnotation.java‎
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diff --git a/‎biojava-alignment/src/main/java/org/biojava/nbio/alignment/io/StockholmStructure.java‎
Lines changed: 1 addition & 1 deletion b/‎biojava-alignment/src/main/java/org/biojava/nbio/alignment/io/StockholmStructure.java‎
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diff --git a/‎biojava-core/src/main/java/org/biojava/nbio/core/search/io/blast/BlastXMLParser.java‎
Lines changed: 1 addition & 1 deletion b/‎biojava-core/src/main/java/org/biojava/nbio/core/search/io/blast/BlastXMLParser.java‎
Lines changed: 1 addition & 1 deletion
@@ -44,4 +44,4 @@ public boolean handleEvent(ValidationEvent ve) {
 		}
 		return true;
 	}
-}
+}
@@ -48,4 +48,4 @@ public String getName(){
 	public int getCount(){
 		return this.count;
 	}
-}
+}
@@ -65,4 +65,4 @@ private static ProteinSequence getSequenceForId(String uniProtId) throws Excepti
 		return seq;
 	}
 
-}
+}
@@ -73,4 +73,4 @@ private static ProteinSequence getSequenceForId(String uniProtId) throws Excepti
 
 		return seq;
 	}
-}
+}
@@ -141,4 +141,4 @@ public void setModelMask(String modelMask) {
 		this.modelMask = modelMask;
 	}
 
-}
+}
@@ -523,4 +523,4 @@ public void setReferences(Vector<StockholmFileAnnotationReference> references) {
 		this.references = references;
 	}
 
-}
+}
@@ -98,4 +98,4 @@ public void setIntron(String intron) {
 	}
 
 
-}
+}
@@ -107,4 +107,4 @@ public void setLook(String look) {
 		this.look = look;
 	}
 
-}
+}
@@ -385,4 +385,4 @@ public String getReference() {
 			return reference;
 		}
 	}
-}
+}
@@ -251,4 +251,4 @@ public BlastHit(int hitNum, String hitId, String hitDef, String hitAccession, in
 		super(hitNum, hitId, hitDef, hitAccession, hitLen, hitHsps, hitSequence);
 	}
 
-}
+}
Original file line number	Diff line number	Diff line change
`@@ -44,4 +44,4 @@ public boolean handleEvent(ValidationEvent ve) {`
`44`	`44`	`}`
`45`	`45`	`return true;`
`46`	`46`	`}`
`47`		`-}`
	`47`	`+}`
Original file line number	Diff line number	Diff line change
`@@ -48,4 +48,4 @@ public String getName(){`
`48`	`48`	`public int getCount(){`
`49`	`49`	`return this.count;`
`50`	`50`	`}`
`51`		`-}`
	`51`	`+}`
Original file line number	Diff line number	Diff line change
`@@ -65,4 +65,4 @@ private static ProteinSequence getSequenceForId(String uniProtId) throws Excepti`
`65`	`65`	`return seq;`
`66`	`66`	`}`
`67`	`67`
`68`		`-}`
	`68`	`+}`
Original file line number	Diff line number	Diff line change
`@@ -73,4 +73,4 @@ private static ProteinSequence getSequenceForId(String uniProtId) throws Excepti`
`73`	`73`
`74`	`74`	`return seq;`
`75`	`75`	`}`
`76`		`-}`
	`76`	`+}`
Original file line number	Diff line number	Diff line change
`@@ -141,4 +141,4 @@ public void setModelMask(String modelMask) {`
`141`	`141`	`this.modelMask = modelMask;`
`142`	`142`	`}`
`143`	`143`
`144`		`-}`
	`144`	`+}`
Original file line number	Diff line number	Diff line change
`@@ -523,4 +523,4 @@ public void setReferences(Vector<StockholmFileAnnotationReference> references) {`
`523`	`523`	`this.references = references;`
`524`	`524`	`}`
`525`	`525`
`526`		`-}`
	`526`	`+}`
Original file line number	Diff line number	Diff line change
`@@ -98,4 +98,4 @@ public void setIntron(String intron) {`
`98`	`98`	`}`
`99`	`99`
`100`	`100`
`101`		`-}`
	`101`	`+}`
Original file line number	Diff line number	Diff line change
`@@ -107,4 +107,4 @@ public void setLook(String look) {`
`107`	`107`	`this.look = look;`
`108`	`108`	`}`
`109`	`109`
`110`		`-}`
	`110`	`+}`
Original file line number	Diff line number	Diff line change
`@@ -385,4 +385,4 @@ public String getReference() {`
`385`	`385`	`return reference;`
`386`	`386`	`}`
`387`	`387`	`}`
`388`		`-}`
	`388`	`+}`
Original file line number	Diff line number	Diff line change
`@@ -251,4 +251,4 @@ public BlastHit(int hitNum, String hitId, String hitDef, String hitAccession, in`
`251`	`251`	`super(hitNum, hitId, hitDef, hitAccession, hitLen, hitHsps, hitSequence);`
`252`	`252`	`}`
`253`	`253`
`254`		`-}`
	`254`	`+}`