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Modified a test file for the AFPChain, because the blockScore variable
is now calculated in the updateSuperposition method (before it was filled with 0.0). That was the only difference between the generated and the test files, so it has been updated.
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biojava-structure/src/test/resources/1w0p_1qdm.xml

Lines changed: 2 additions & 2 deletions
Original file line numberDiff line numberDiff line change
@@ -1,5 +1,5 @@
11
<AFPChain name1="" name2="" method="unknown" version="1.0" alnLength="53" blockNum="1" gapLen="20" optLength="33" totalLenIni="0" alignScore="0.00" chainRmsd="0.00" identity="0.0377" normAlignScore="0.00" probability="0.00e+00" similarity="0.1509" similarity1="4" similarity2="3" totalRmsdIni="0.00" totalRmsdOpt="12.88" ca1Length="753" ca2Length="1287" afpNum="0" alignScoreUpdate="0.00" time="0" tmScore="0.02">
2-
<block blockNr="0" blockSize="33" blockScore="0.00" blockRmsd="12.88" blockGap="20">
2+
<block blockNr="0" blockSize="33" blockScore="0.02" blockRmsd="12.88" blockGap="20">
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<eqr eqrNr="0" pdbres1="361" chain1="A" pdbres2="78S" chain2="C" />
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<eqr eqrNr="1" pdbres1="362" chain1="A" pdbres2="79S" chain2="C" />
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<eqr eqrNr="2" pdbres1="363" chain1="A" pdbres2="80S" chain2="C" />
@@ -36,4 +36,4 @@
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<matrix mat11="-0.433626" mat12="0.882212" mat13="0.183496" mat21="-0.805273" mat22="-0.470775" mat23="0.360425" mat31="0.404356" mat32="0.008525" mat33="0.914562" />
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<shift x="-14.232" y="12.410" z="66.149" />
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</block>
39-
</AFPChain>
39+
</AFPChain>

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