work around if ReducedChemCompProvider is getting used

andreasprlic · andreasprlic · commit 7d49d52991b6 · 2015-09-15T22:16:37.000-07:00
diff --git a/biojava-structure/src/test/java/org/biojava/nbio/structure/redmine/test1DARSeqAlign.java b/biojava-structure/src/test/java/org/biojava/nbio/structure/redmine/test1DARSeqAlign.java
@@ -25,6 +25,10 @@
 import org.biojava.nbio.structure.*;
 import org.biojava.nbio.structure.align.util.AtomCache;
 import org.biojava.nbio.structure.io.FileParsingParameters;
+import org.biojava.nbio.structure.io.mmcif.ChemCompGroupFactory;
+import org.biojava.nbio.structure.io.mmcif.ChemCompProvider;
+import org.biojava.nbio.structure.io.mmcif.DownloadChemCompProvider;
+import org.biojava.nbio.structure.io.mmcif.ReducedChemCompProvider;
 
 /** test for https://redmine.open-bio.org/issues/3282
  * 
@@ -41,7 +45,16 @@ public void test1DAR(){
 		params.setLoadChemCompInfo(true);
 		
 		cache.setFileParsingParams(params);
-		
+
+		boolean usingReducedChemCompProvider = false;
+
+		ChemCompProvider ccp =ChemCompGroupFactory.getChemCompProvider();
+		if (ccp.getClass().getName().contains("ReducedChemCompProvider") ) {
+			usingReducedChemCompProvider = true;
+
+			ChemCompGroupFactory.setChemCompProvider(new DownloadChemCompProvider());
+		}
+
 		
 		try {
 			Structure struc = cache.getStructure("1DAR");
@@ -75,7 +88,8 @@ public void test1DAR(){
 		}
 		
 		
-		
+		if (usingReducedChemCompProvider)
+			ChemCompGroupFactory.setChemCompProvider(ccp);
 		
 		cache.setFileParsingParams(orig);
 	}
