Fix small bug with short non-symmetric alignments

lafita · lafita · commit 3e3ed52a7829 · 2015-08-13T15:35:09.000+02:00
diff --git a/biojava-structure/src/main/java/org/biojava/nbio/structure/symmetry/utils/SymmetryTools.java b/biojava-structure/src/main/java/org/biojava/nbio/structure/symmetry/utils/SymmetryTools.java
@@ -468,7 +468,7 @@ public static Structure getQuaternaryStructure(MultipleAlignment symmetry) {
 			}
 			count = 1;
 			Integer end = null;
-			while (end == null && count<align.length()){
+			while (end == null && count<=align.length()){
 				end = align.getAlignRes().get(i).get(align.length()-count);
 				count++;
 			}

Original file line number	Diff line number	Diff line change
`@@ -468,7 +468,7 @@ public static Structure getQuaternaryStructure(MultipleAlignment symmetry) {`
`468`	`468`	`}`
`469`	`469`	`count = 1;`
`470`	`470`	`Integer end = null;`
`471`		`- while (end == null && count<align.length()){`
	`471`	`+ while (end == null && count<=align.length()){`
`472`	`472`	`end = align.getAlignRes().get(i).get(align.length()-count);`
`473`	`473`	`count++;`
`474`	`474`	`}`