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andreasprlicandreasprlic
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moving the last ant based trunk to a branch
git-svn-id: http://code.open-bio.org/repos/biojava/biojava-live/trunk@7227 7c6358e6-4a41-0410-a743-a5b2a554c398
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‎LICENSE‎

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‎alignment/pom.xml‎

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<?xml version="1.0"?><project>
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<parent>
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<artifactId>biojava</artifactId>
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<groupId>org.biojava</groupId>
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<version>3.0-SNAPSHOT</version>
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</parent>
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<modelVersion>4.0.0</modelVersion>
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<groupId>org.biojava</groupId>
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<artifactId>alignment</artifactId>
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<name>alignment</name>
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<version>3.0-SNAPSHOT</version>
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<url>http://maven.apache.org</url>
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<dependencies>
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<dependency>
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<groupId>junit</groupId>
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<artifactId>junit</artifactId>
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<version>3.8.1</version>
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<scope>test</scope>
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</dependency>
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<dependency>
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<groupId>org.biojava</groupId>
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<artifactId>core</artifactId>
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<version>3.0-SNAPSHOT</version>
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<scope>compile</scope>
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</dependency>
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</dependencies>
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</project>

‎alignment/src/main/java/org/biojava/bio/alignment/ARAlignment.java‎

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/*
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* BioJava development code
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*
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* This code may be freely distributed and modified under the
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* terms of the GNU Lesser General Public Licence. This should
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* be distributed with the code. If you do not have a copy,
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* see:
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*
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* http://www.gnu.org/copyleft/lesser.html
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*
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* Copyright for this code is held jointly by the individual
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* authors. These should be listed in @author doc comments.
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*
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* For more information on the BioJava project and its aims,
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* or to join the biojava-l mailing list, visit the home page
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* at:
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*
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* http://www.biojava.org/
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*
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*/
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package org.biojava.bio.alignment;
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import org.biojava.bio.BioException;
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import org.biojava.utils.ChangeType;
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import org.biojava.utils.ChangeVetoException;
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/**
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* <p>ARAlignment is an interface that defines methods for adding and
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* removing seqeunces from an Alignment.</p>
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*
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* @author David Waring
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*/
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public interface ARAlignment extends Alignment{
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public void addSequence(AlignmentElement ae) throws ChangeVetoException,BioException;
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public void removeSequence(Object label) throws ChangeVetoException;
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public static final ChangeType ADD_LABEL = new ChangeType(
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"Adding a sequence to the alignment",
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"org.biojava.bio.alignment.ARAlignment",
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"ADD_LABEL"
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);
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public static final ChangeType REMOVE_LABEL = new ChangeType(
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"Adding a sequence to the alignment",
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"org.biojava.bio.alignment.ARAlignment",
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"REMOVE_LABEL"
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);
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}

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