Make classes serializable for Spark

abradle · abradle · commit 1a0e5bdd9097 · 2016-03-07T10:11:35.000-08:00
diff --git a/biojava-core/src/main/java/org/biojava/nbio/core/alignment/matrices/SimpleSubstitutionMatrix.java b/biojava-core/src/main/java/org/biojava/nbio/core/alignment/matrices/SimpleSubstitutionMatrix.java
@@ -43,7 +43,12 @@
  */
 public class SimpleSubstitutionMatrix<C extends Compound> implements SubstitutionMatrix<C>, Serializable {
 	
-    private static final String comment = "#";
+    /**
+	 * 
+	 */
+	private static final long serialVersionUID = -2645265638108462479L;
+
+	private static final String comment = "#";
 
     private CompoundSet<C> compoundSet;
     private String description, name;
diff --git a/biojava-core/src/main/java/org/biojava/nbio/core/sequence/compound/AminoAcidCompound.java b/biojava-core/src/main/java/org/biojava/nbio/core/sequence/compound/AminoAcidCompound.java
@@ -37,7 +37,11 @@
  */
 public class AminoAcidCompound extends AbstractCompound implements Serializable {
 
-  private final AminoAcidCompoundSet compoundSet;
+  /**
+	 * 
+	 */
+	private static final long serialVersionUID = -1955116496725902319L;
+private final AminoAcidCompoundSet compoundSet;
 
   public AminoAcidCompound(AminoAcidCompoundSet compoundSet, String shortName,
       String longName, String description, Float molecularWeight) {
