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remove duplicate generics
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biojava-core/src/test/java/org/biojava/nbio/core/sequence/MultipleSequenceAlignmentTest.java

Lines changed: 4 additions & 4 deletions
Original file line numberDiff line numberDiff line change
@@ -43,11 +43,11 @@ public class MultipleSequenceAlignmentTest {
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@Before
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public void setup() throws CompoundNotFoundException {
46-
msaProteins = new MultipleSequenceAlignment<ProteinSequence, AminoAcidCompound>();
46+
msaProteins = new MultipleSequenceAlignment<>();
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for (int i = 0; i < 8; i++) {
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msaProteins.addAlignedSequence(new ProteinSequence("ARNDCEQGHILKMFPSTWYVBZJX"));
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}
50-
msaDNA = new MultipleSequenceAlignment<DNASequence, NucleotideCompound>();
50+
msaDNA = new MultipleSequenceAlignment<>();
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for (int i = 0; i < 7; i++) {
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msaDNA.addAlignedSequence(new DNASequence("ATCGATCGATCGATCG"));
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}
@@ -56,13 +56,13 @@ public void setup() throws CompoundNotFoundException {
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@Test
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public void testGetCompoundsAt() {
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AminoAcidCompound aminoAcid = AminoAcidCompoundSet.getAminoAcidCompoundSet().getCompoundForString("N");
59-
List<AminoAcidCompound> colProteins = new ArrayList<AminoAcidCompound>();
59+
List<AminoAcidCompound> colProteins = new ArrayList<>();
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for (int i = 0; i < 8; i++) {
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colProteins.add(aminoAcid);
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}
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assertEquals(msaProteins.getCompoundsAt(3), colProteins);
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NucleotideCompound nucleotide = DNACompoundSet.getDNACompoundSet().getCompoundForString("C");
65-
List<NucleotideCompound> colDNA = new ArrayList<NucleotideCompound>();
65+
List<NucleotideCompound> colDNA = new ArrayList<>();
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for (int i = 0; i < 7; i++) {
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colDNA.add(nucleotide);
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}

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