nEvents=10

#To activate the continuos readout, assign a positive value to the rate

rate=50.e3

o2sim -n $nEvents -m PIPE ITS TPC FRAME >& sim.log

macroPath="$O2_ROOT/share/macro"

preload="$macroPath"/loadExtDepLib.C

simFile='"o2sim.root"'

parFile='"o2sim_par.root"'

grpFile='"o2sim_grp.root"'

digFile='"o2dig.root"';

clsITSFile='"o2clus_its.root"'

clsTPCFile='"o2clus_tpc.root"'

clsTPCHWFile='"o2clus_tpc_HW.root"'

clsTPCNatFile='"o2clus_tpc_Native.root"'

trcITSFile='"o2track_its.root"'

trcTPCFile='"o2track_tpc.root"'

matchFile='"o2match_itstpc.root"'

geomFile='"O2geometry.root"'

root -l -b -q $preload "$macroPath"/run_digi_all.C+\($rate,$digFile,$simFile,$parFile,$grpFile\) >& dig.log

root -l -b -q $preload "$macroPath"/run_clus_its.C+\($clsITSFile,$digFile,$parFile\) >& clus_its.log

root -l -b -q $preload "$macroPath"/run_clus_tpc.C+\($clsTPCFile,$digFile,$parFile\) >& clus_tpc.log

root -l -b -q $preload "$macroPath"/run_trac_its.C+\($rate,$trcITSFile,$clsITSFile,$parFile\) >& rec_its.log

#convert old clusters to ClusterHardware

root -l -b -q $preload "$macroPath"/convertClusterToClusterHardware.C+\($clsTPCFile,$clsTPCHWFile\) >& convOls2HW.log

#convert ClusterHardware to ClusterNative

root -l -b -q $preload "$macroPath"/runHardwareClusterDecoderRoot.C+\($clsTPCHWFile,$clsTPCNatFile\) >& convHV2Native.log

#Run tracking on ClusterNative type

root -l -b -q $preload "$macroPath"/runCATrackingClusterNative.C+\($clsTPCNatFile,$trcTPCFile,'"cont refX=83 bz=-5.0068597793"'\) >& tpcTracking.log

root -l -b -q $preload "$macroPath"/run_match_TPCITS.C+\(\"./\",$matchFile,$trcITSFile,$trcTPCFile,$clsITSFile,$geomFile,$grpFile\) >& matcTPCITS.log