One easy way to use SciJava Ops is within ImageJ2/Fiji, using SciJava's Script Editor. Note that to use ImageJ2/Fiji, you must use Java 11+. Instructions on using Java 11+ for ImageJ2/Fiji can be found here.
You can install the SciJava Ops update site (containing ImageJ Ops2, SciJava Ops, and all other required components) by following the Update site tutorial.
- With Fiji open, navigate to
Help --> Update... - Click
Manage Update Sites - In the
Searchbar at the top of the popup, searchSciJava Ops - Find the
SciJava Opsrow, and check the checkbox in theActivecolumn. - Click
Apply and Close. You should see many items appear in theImageJ Updatertable. - Click
Apply Changes - Restart Fiji