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Installation

Fiji

One easy way to use SciJava Ops is within ImageJ2/Fiji, using SciJava's Script Editor. Note that to use ImageJ2/Fiji, you must use Java 11+. Instructions on using Java 11+ for ImageJ2/Fiji can be found here.

Installing the SciJava Ops update site

You can install the SciJava Ops update site (containing ImageJ Ops2, SciJava Ops, and all other required components) by following the Update site tutorial.

  1. With Fiji open, navigate to Help --> Update...
  2. Click Manage Update Sites
  3. In the Search bar at the top of the popup, search SciJava Ops
  4. Find the SciJava Ops row, and check the checkbox in the Active column.
  5. Click Apply and Close. You should see many items appear in the ImageJ Updater table.
  6. Click Apply Changes
  7. Restart Fiji