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 * #%L
 * Image processing operations for SciJava Ops.
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package org.scijava.ops.image.threshold.localNiblack;

import java.util.Arrays;
import java.util.function.Function;

import org.scijava.ops.image.threshold.ApplyLocalThresholdIntegral;
import net.imglib2.RandomAccessibleInterval;
import net.imglib2.algorithm.neighborhood.RectangleNeighborhood;
import net.imglib2.algorithm.neighborhood.RectangleShape;
import net.imglib2.algorithm.neighborhood.Shape;
import net.imglib2.outofbounds.OutOfBoundsFactory;
import net.imglib2.type.logic.BitType;
import net.imglib2.type.numeric.RealType;
import net.imglib2.type.numeric.real.DoubleType;
import net.imglib2.view.composite.Composite;

import org.scijava.function.Computers;
import org.scijava.ops.spi.Nullable;
import org.scijava.ops.spi.OpDependency;

/**
 * @implNote op names='threshold.localNiblack', priority='-100.'
 */
public class LocalNiblackThreshold<T extends RealType<T>> extends
	ApplyLocalThresholdIntegral<T, DoubleType> implements
	Computers.Arity5<RandomAccessibleInterval<T>, Shape, Double, Double, OutOfBoundsFactory<T, RandomAccessibleInterval<T>>, //
			RandomAccessibleInterval<BitType>> {

	private static final int INTEGRAL_IMAGE_ORDER_1 = 1;
	private static final int INTEGRAL_IMAGE_ORDER_2 = 2;

	@OpDependency(name = "threshold.localNiblack")
	private Computers.Arity4<Iterable<T>, T, Double, Double, BitType> computeThresholdNonIntegralOp;

	@OpDependency(name = "threshold.localNiblack")
	private Computers.Arity4<RectangleNeighborhood<? extends Composite<DoubleType>>, T, Double, Double, BitType> computeThresholdIntegralOp;

	@OpDependency(name = "filter.applyCenterAware")
	private Computers.Arity4<RandomAccessibleInterval<T>, Computers.Arity2<Iterable<T>, T, BitType>, Shape, OutOfBoundsFactory<T, RandomAccessibleInterval<T>>, RandomAccessibleInterval<BitType>> applyFilterOp;

	/**
	 * TODO
	 *
	 * @param input
	 * @param inputNeighborhoodShape
	 * @param c
	 * @param k
	 * @param outOfBoundsFactory
	 * @param output
	 */
	@Override
	public void compute(final RandomAccessibleInterval<T> input,
		final Shape inputNeighborhoodShape, final Double c, final Double k,
		@Nullable OutOfBoundsFactory<T, RandomAccessibleInterval<T>> outOfBoundsFactory,
		final RandomAccessibleInterval<BitType> output)
	{
		// Use integral images for sufficiently large windows.
        var rShape = inputNeighborhoodShape instanceof RectangleShape
			? (RectangleShape) inputNeighborhoodShape : null;
		if (rShape != null && rShape.getSpan() > 2 && !rShape.isSkippingCenter()) {
			// NB: under these conditions, the RectangleShape will produce
			// RectangleNeighborhoods (which is needed to perform the computations via
			// an IntegralImg).
			computeIntegral(input, rShape, c, k, outOfBoundsFactory,
				getIntegralImageOp(INTEGRAL_IMAGE_ORDER_1), getIntegralImageOp(
					INTEGRAL_IMAGE_ORDER_2), computeThresholdIntegralOp, output);
		}
		else {
			computeNonIntegral(input, inputNeighborhoodShape, c, k,
				outOfBoundsFactory, computeThresholdNonIntegralOp, output);
		}
	}

	public void computeNonIntegral(final RandomAccessibleInterval<T> input,
		final Shape inputNeighborhoodShape, final Double c, final Double k,
		final OutOfBoundsFactory<T, RandomAccessibleInterval<T>> outOfBoundsFactory,
		final Computers.Arity4<Iterable<T>, T, Double, Double, BitType> computeThresholdOp,
		final RandomAccessibleInterval<BitType> output)
	{
		final Computers.Arity2<Iterable<T>, T, BitType> parameterizedComputeThresholdOp = //
			(i1, i2, o) -> computeThresholdOp.compute(i1, i2, c, k, o);
		applyFilterOp.compute(input, parameterizedComputeThresholdOp,
			inputNeighborhoodShape, outOfBoundsFactory, output);
	}

	public void computeIntegral(final RandomAccessibleInterval<T> input,
		final RectangleShape inputNeighborhoodShape, final Double c, final Double k,
		final OutOfBoundsFactory<T, RandomAccessibleInterval<T>> outOfBoundsFactory,
		final Function<RandomAccessibleInterval<T>, RandomAccessibleInterval<DoubleType>> integralImageOp,
		final Function<RandomAccessibleInterval<T>, RandomAccessibleInterval<DoubleType>> squareIntegralImageOp,
		final Computers.Arity4<RectangleNeighborhood<? extends Composite<DoubleType>>, T, Double, Double, BitType> computeThresholdOp,
		final RandomAccessibleInterval<BitType> output)
	{
		final Computers.Arity2<RectangleNeighborhood<? extends Composite<DoubleType>>, T, BitType> parameterizedComputeThresholdOp = //
			(i1, i2, o) -> computeThresholdOp.compute(i1, i2, c, k, o);
		compute(input, inputNeighborhoodShape, outOfBoundsFactory, Arrays.asList(
			integralImageOp, squareIntegralImageOp), parameterizedComputeThresholdOp,
			output);
	}
}
