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| 1 | +version: 1 |
| 2 | +project: |
| 3 | + title: 'PHY 546: Python for Scientific Computing' |
| 4 | + authors: |
| 5 | + - name: Michael Zingale |
| 6 | + url: https://zingale.github.io |
| 7 | + github: zingale |
| 8 | + bluesky: michaelzingale.bsky.social |
| 9 | + |
| 10 | + copyright: '2025' |
| 11 | + github: sbu-python-class/python-science |
| 12 | + thebe: |
| 13 | + binder: |
| 14 | + repo: sbu-python-class/python-science |
| 15 | + provider: github |
| 16 | + url: https://mybinder.org |
| 17 | + ref: main |
| 18 | + exports: |
| 19 | + - format: pdf |
| 20 | + template: plain_latex_book |
| 21 | + output: exports/book.pdf |
| 22 | + toc: |
| 23 | + - file: Introduction.md |
| 24 | + - title: Getting Started |
| 25 | + children: |
| 26 | + - file: 01-python/installing.md |
| 27 | + - file: 01-python/using.md |
| 28 | + - file: 01-python/w1-jupyter.ipynb |
| 29 | + - title: Python Basics |
| 30 | + children: |
| 31 | + - file: 01-python/basics.md |
| 32 | + children: |
| 33 | + - file: 01-python/w1-python-datatypes.ipynb |
| 34 | + - file: 01-python/w2-python-advanced-datatypes.ipynb |
| 35 | + - file: 01-python/w2-python-control-flow.ipynb |
| 36 | + - file: 01-python/w2-python-exercises.ipynb |
| 37 | + - file: 01-python/functions-classes.md |
| 38 | + children: |
| 39 | + - file: 01-python/w3-python-functions.ipynb |
| 40 | + - file: 01-python/w3-python-exercises.ipynb |
| 41 | + - file: 01-python/w4-python-classes.ipynb |
| 42 | + - file: 01-python/w4-python-modules.ipynb |
| 43 | + - file: 01-python/w4-python-exercises.ipynb |
| 44 | + - file: 01-python/misc.md |
| 45 | + children: |
| 46 | + - file: 01-python/w3-python-exceptions.ipynb |
| 47 | + - file: 01-python/python-io.ipynb |
| 48 | + - file: 01-python/w5-python-more-examples.ipynb |
| 49 | + - title: Arrays |
| 50 | + children: |
| 51 | + - file: 02-numpy/numpy.md |
| 52 | + children: |
| 53 | + - file: 02-numpy/numpy-basics.ipynb |
| 54 | + - file: 02-numpy/numpy-advanced.ipynb |
| 55 | + - file: 02-numpy/numpy-exercises.ipynb |
| 56 | + - title: Scientific Python |
| 57 | + children: |
| 58 | + - file: 04-matplotlib/matplotlib.md |
| 59 | + children: |
| 60 | + - file: 04-matplotlib/matplotlib-basics.ipynb |
| 61 | + - file: 04-matplotlib/matplotlib-exercises.ipynb |
| 62 | + - file: 05-scipy/scipy.md |
| 63 | + children: |
| 64 | + - file: 05-scipy/scipy-basics.ipynb |
| 65 | + - file: 05-scipy/scipy-exercises.ipynb |
| 66 | + - file: 05-scipy/scipy-basics-2.ipynb |
| 67 | + - file: 05-scipy/scipy-exercises-2.ipynb |
| 68 | + - file: 06-sympy/sympy.md |
| 69 | + children: |
| 70 | + - file: 06-sympy/sympy-examples.ipynb |
| 71 | + - file: 06-sympy/sympy-exercises.ipynb |
| 72 | + - title: Machine Learning |
| 73 | + children: |
| 74 | + - file: 11-machine-learning/neural-net-basics.md |
| 75 | + children: |
| 76 | + - file: 11-machine-learning/gradient-descent.ipynb |
| 77 | + - file: 11-machine-learning/neural-net-derivation.md |
| 78 | + - file: 11-machine-learning/neural-net-hidden.md |
| 79 | + children: |
| 80 | + - file: 11-machine-learning/neural-net-improvements.md |
| 81 | + - file: 11-machine-learning/machine-learning-libraries.md |
| 82 | + children: |
| 83 | + - file: 11-machine-learning/keras-mnist.ipynb |
| 84 | + - file: 11-machine-learning/keras-clustering.ipynb |
| 85 | + - title: Python packaging and applications |
| 86 | + children: |
| 87 | + - file: 09-packages/python-modules.md |
| 88 | + - file: 09-packages/python-arguments.md |
| 89 | + - file: 09-packages/python-more-modules.md |
| 90 | + - file: 09-packages/python-packages.md |
| 91 | + - file: 09-packages/python-tools.md |
| 92 | + - title: Git and Github |
| 93 | + children: |
| 94 | + - file: git/version-control.md |
| 95 | + - file: git/git.md |
| 96 | + - file: git/github.md |
| 97 | + - file: git/pull-requests.md |
| 98 | + - title: Unit tests |
| 99 | + children: |
| 100 | + - file: 10-testing/testing.md |
| 101 | + - file: 10-testing/pytest.md |
| 102 | + children: |
| 103 | + - file: 10-testing/more-pytest.md |
| 104 | + - file: 10-testing/real-world-example.md |
| 105 | + - title: Extensions |
| 106 | + children: |
| 107 | + - file: 12-extensions/extensions-overview.md |
| 108 | + - file: 12-extensions/extensions-example.md |
| 109 | +site: |
| 110 | + options: |
| 111 | + folders: true |
| 112 | + template: book-theme |
| 113 | + |
| 114 | +html: |
| 115 | + announcement: "" |
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