#!/usr/bin/env python

import argparse

import logging

import sys

from .__init__ import __version__

from .samplot import add_plot

from .samplot_vcf import add_vcf

def main(args=None):

logging.basicConfig(level=logging.INFO, stream=sys.stderr,

format="%(module)s - %(levelname)s: %(message)s")

if args is None:

args = sys.argv[1:]

parser = argparse.ArgumentParser(

prog="samplot", formatter_class=argparse.ArgumentDefaultsHelpFormatter

)

parser.add_argument(

"-v",

"--version",

help="Installed version",

action="version",

version="%(prog)s " + str(__version__),

)

sub = parser.add_subparsers(title="[sub-commands]", dest="command")

sub.required = True

add_plot(sub)

add_vcf(sub)

args,extra_args = parser.parse_known_args(args)

args.func(parser, args, extra_args)

if __name__ == "__main__":

sys.exit(main() or 0)