Fixing biojava#988

josemduarte · josemduarte · commit 8e904fd98ad0 · 2021-10-29T15:27:44.000-07:00
diff --git a/biojava-structure/pom.xml b/biojava-structure/pom.xml
@@ -63,7 +63,7 @@
 		<dependency>
 			<groupId>org.jgrapht</groupId>
   			<artifactId>jgrapht-core</artifactId>
-  			<version>1.1.0</version>
+  			<version>1.5.1</version>
 		</dependency>
 
 		<!-- JAXb explicit dependency is needed since Java 9. See https://stackoverflow.com/questions/43574426/how-to-resolve-java-lang-noclassdeffounderror-javax-xml-bind-jaxbexception-in-j
diff --git a/biojava-structure/src/main/java/org/biojava/nbio/structure/symmetry/internal/CeSymmIterative.java b/biojava-structure/src/main/java/org/biojava/nbio/structure/symmetry/internal/CeSymmIterative.java
@@ -45,7 +45,7 @@
 import org.biojava.nbio.structure.symmetry.internal.CESymmParameters.SymmetryType;
 import org.biojava.nbio.structure.symmetry.utils.SymmetryTools;
 import org.jgrapht.Graph;
-import org.jgrapht.alg.ConnectivityInspector;
+import org.jgrapht.alg.connectivity.ConnectivityInspector;
 import org.jgrapht.graph.DefaultEdge;
 import org.jgrapht.graph.SimpleGraph;
 import org.slf4j.Logger;
diff --git a/biojava-structure/src/main/java/org/biojava/nbio/structure/symmetry/internal/GraphComponentOrderDetector.java b/biojava-structure/src/main/java/org/biojava/nbio/structure/symmetry/internal/GraphComponentOrderDetector.java
@@ -29,7 +29,7 @@
 import org.biojava.nbio.structure.align.model.AFPChain;
 import org.biojava.nbio.structure.symmetry.utils.SymmetryTools;
 import org.jgrapht.Graph;
-import org.jgrapht.alg.ConnectivityInspector;
+import org.jgrapht.alg.connectivity.ConnectivityInspector;
 import org.jgrapht.graph.DefaultEdge;
 
 /**
diff --git a/biojava-structure/src/main/java/org/biojava/nbio/structure/symmetry/internal/GraphComponentRefiner.java b/biojava-structure/src/main/java/org/biojava/nbio/structure/symmetry/internal/GraphComponentRefiner.java
@@ -35,7 +35,7 @@
 import org.biojava.nbio.structure.align.util.AlignmentTools;
 import org.biojava.nbio.structure.symmetry.utils.SymmetryTools;
 import org.jgrapht.Graph;
-import org.jgrapht.alg.ConnectivityInspector;
+import org.jgrapht.alg.connectivity.ConnectivityInspector;
 import org.jgrapht.graph.DefaultEdge;
 
 /**
