forked from tidepool-org/LoopAlgorithm
-
Notifications
You must be signed in to change notification settings - Fork 0
Expand file tree
/
Copy pathAlgorithmInputFixture.swift
More file actions
270 lines (247 loc) · 12.4 KB
/
AlgorithmInputFixture.swift
File metadata and controls
270 lines (247 loc) · 12.4 KB
1
2
3
4
5
6
7
8
9
10
11
12
13
14
15
16
17
18
19
20
21
22
23
24
25
26
27
28
29
30
31
32
33
34
35
36
37
38
39
40
41
42
43
44
45
46
47
48
49
50
51
52
53
54
55
56
57
58
59
60
61
62
63
64
65
66
67
68
69
70
71
72
73
74
75
76
77
78
79
80
81
82
83
84
85
86
87
88
89
90
91
92
93
94
95
96
97
98
99
100
101
102
103
104
105
106
107
108
109
110
111
112
113
114
115
116
117
118
119
120
121
122
123
124
125
126
127
128
129
130
131
132
133
134
135
136
137
138
139
140
141
142
143
144
145
146
147
148
149
150
151
152
153
154
155
156
157
158
159
160
161
162
163
164
165
166
167
168
169
170
171
172
173
174
175
176
177
178
179
180
181
182
183
184
185
186
187
188
189
190
191
192
193
194
195
196
197
198
199
200
201
202
203
204
205
206
207
208
209
210
211
212
213
214
215
216
217
218
219
220
221
222
223
224
225
226
227
228
229
230
231
232
233
234
235
236
237
238
239
240
241
242
243
244
245
246
247
248
249
250
251
252
253
254
255
256
257
258
259
260
261
262
263
264
265
266
267
268
269
270
//
// AlgorithmInputFixture.swift
//
//
// Created by Pete Schwamb on 2/23/24.
//
import Foundation
public enum AlgorithmInputFixtureDecodingError: Error {
case invalidDoseRecommendationType
case invalidInsulinType
case doseRateMissing
case doseVolumeMissing
}
public struct AlgorithmInputFixture: AlgorithmInput {
public var predictionStart: Date
public var glucoseHistory: [FixtureGlucoseSample]
public var doses: [FixtureInsulinDose]
public var carbEntries: [FixtureCarbEntry]
public var basal: [AbsoluteScheduleValue<Double>]
public var sensitivity: [AbsoluteScheduleValue<LoopQuantity>]
public var carbRatio: [AbsoluteScheduleValue<Double>]
public var target: GlucoseRangeTimeline
public var suspendThreshold: LoopQuantity?
public var maxBolus: Double
public var maxActiveInsulinMultiplier: Double?
public var maxBasalRate: Double
public var useIntegralRetrospectiveCorrection: Bool
public var includePositiveVelocityAndRC: Bool
public var useMidAbsorptionISF: Bool
public var carbAbsorptionModel: CarbAbsorptionModel = .piecewiseLinear
public var recommendationInsulinType: FixtureInsulinType = .novolog
public var recommendationType: DoseRecommendationType = .automaticBolus
public var automaticBolusApplicationFactor: Double?
public var gradualTransitionsThreshold: Double?
public var recommendationInsulinModel: InsulinModel {
recommendationInsulinType.insulinModel
}
struct TargetEntry: Codable {
var startDate: Date
var endDate: Date
var lowerBound: Double
var upperBound: Double
}
struct Glucose {
var value: Double
var isCalibration: Bool
var date: Date
}
public init(
predictionStart: Date,
glucoseHistory: [FixtureGlucoseSample],
doses: [FixtureInsulinDose],
carbEntries: [FixtureCarbEntry],
basal: [AbsoluteScheduleValue<Double>],
sensitivity: [AbsoluteScheduleValue<LoopQuantity>],
carbRatio: [AbsoluteScheduleValue<Double>],
target: GlucoseRangeTimeline,
suspendThreshold: LoopQuantity?,
maxBolus: Double,
maxActiveInsulinMultiplier: Double? = nil,
maxBasalRate: Double,
useIntegralRetrospectiveCorrection: Bool = false,
useMidAbsorptionISF: Bool = false,
includePositiveVelocityAndRC: Bool = true,
carbAbsorptionModel: CarbAbsorptionModel = .piecewiseLinear,
recommendationInsulinType: FixtureInsulinType,
recommendationType: DoseRecommendationType,
automaticBolusApplicationFactor: Double? = nil,
gradualTransitionsThreshold: Double? = 40.0
) {
self.predictionStart = predictionStart
self.glucoseHistory = glucoseHistory
self.doses = doses
self.carbEntries = carbEntries
self.basal = basal
self.sensitivity = sensitivity
self.carbRatio = carbRatio
self.target = target
self.suspendThreshold = suspendThreshold
self.maxBolus = maxBolus
self.maxActiveInsulinMultiplier = maxActiveInsulinMultiplier
self.maxBasalRate = maxBasalRate
self.useIntegralRetrospectiveCorrection = useIntegralRetrospectiveCorrection
self.includePositiveVelocityAndRC = includePositiveVelocityAndRC
self.useMidAbsorptionISF = useMidAbsorptionISF
self.carbAbsorptionModel = carbAbsorptionModel
self.recommendationInsulinType = recommendationInsulinType
self.recommendationType = recommendationType
self.automaticBolusApplicationFactor = automaticBolusApplicationFactor
self.gradualTransitionsThreshold = gradualTransitionsThreshold
}
}
extension AlgorithmInputFixture: Codable {
public init(from decoder: Decoder) throws {
let container = try decoder.container(keyedBy: CodingKeys.self)
self.predictionStart = try container.decode(Date.self, forKey: .predictionStart)
self.glucoseHistory = try container.decode([FixtureGlucoseSample].self, forKey: .glucoseHistory)
self.doses = try container.decode([FixtureInsulinDose].self, forKey: .doses)
self.carbEntries = try container.decode([FixtureCarbEntry].self, forKey: .carbEntries)
self.basal = try container.decode([AbsoluteScheduleValue<Double>].self, forKey: .basal)
let sensitivityMgdl = try container.decode([AbsoluteScheduleValue<Double>].self, forKey: .sensitivity)
self.sensitivity = sensitivityMgdl.map { AbsoluteScheduleValue(startDate: $0.startDate, endDate: $0.endDate, value: LoopQuantity(unit: .milligramsPerDeciliter, doubleValue: $0.value))}
self.carbRatio = try container.decode([AbsoluteScheduleValue<Double>].self, forKey: .carbRatio)
let targetMgdl = try container.decode([TargetEntry].self, forKey: .target)
self.target = targetMgdl.map {
let lower = LoopQuantity(unit: .milligramsPerDeciliter, doubleValue: $0.lowerBound)
let upper = LoopQuantity(unit: .milligramsPerDeciliter, doubleValue: $0.upperBound)
let range = ClosedRange(uncheckedBounds: (lower: lower, upper: upper))
return AbsoluteScheduleValue(startDate: $0.startDate, endDate: $0.endDate, value: range)
}
if let suspendThresholdMgdl = try container.decodeIfPresent(Double.self, forKey: .suspendThreshold) {
self.suspendThreshold = LoopQuantity(unit: .milligramsPerDeciliter, doubleValue: suspendThresholdMgdl)
}
self.maxBolus = try container.decode(Double.self, forKey: .maxBolus)
self.maxActiveInsulinMultiplier = try container.decodeIfPresent(Double.self, forKey: .maxActiveInsulinMultiplier)
self.maxBasalRate = try container.decode(Double.self, forKey: .maxBasalRate)
self.useIntegralRetrospectiveCorrection = try container.decodeIfPresent(Bool.self, forKey: .useIntegralRetrospectiveCorrection) ?? false
self.includePositiveVelocityAndRC = try container.decodeIfPresent(Bool.self, forKey: .includePositiveVelocityAndRC) ?? true
self.useMidAbsorptionISF = try container.decodeIfPresent(Bool.self, forKey: .useMidAbsorptionISF) ?? false
if let rawRecommendationInsulinType = try container.decodeIfPresent(String.self, forKey: .recommendationInsulinType) {
guard let decodedRecommendationInsulinType = FixtureInsulinType(rawValue: rawRecommendationInsulinType) else {
throw AlgorithmInputFixtureDecodingError.invalidInsulinType
}
self.recommendationInsulinType = decodedRecommendationInsulinType
} else {
self.recommendationInsulinType = .novolog
}
if let rawRecommendationType = try container.decodeIfPresent(String.self, forKey: .recommendationType) {
guard let decodedRecommendationType = DoseRecommendationType(rawValue: rawRecommendationType) else {
throw AlgorithmInputFixtureDecodingError.invalidDoseRecommendationType
}
self.recommendationType = decodedRecommendationType
} else {
self.recommendationType = .automaticBolus
}
self.automaticBolusApplicationFactor = try container.decodeIfPresent(Double.self, forKey: .automaticBolusApplicationFactor)
self.gradualTransitionsThreshold = try container.decodeIfPresent(Double.self, forKey: .gradualTransitionsThreshold) ?? 40.0
}
public func encode(to encoder: Encoder) throws {
var container = encoder.container(keyedBy: CodingKeys.self)
try container.encode(predictionStart, forKey: .predictionStart)
try container.encode(glucoseHistory, forKey: .glucoseHistory)
try container.encode(glucoseHistory, forKey: .glucoseHistory)
try container.encode(doses, forKey: .doses)
try container.encode(carbEntries, forKey: .carbEntries)
try container.encode(basal, forKey: .basal)
let sensitivityMgdl = sensitivity.map { AbsoluteScheduleValue(startDate: $0.startDate, endDate: $0.endDate, value: $0.value.doubleValue(for: .milligramsPerDeciliter)) }
try container.encode(sensitivityMgdl, forKey: .sensitivity)
try container.encode(carbRatio, forKey: .carbRatio)
let targetMgdl = target.map {
let lower = $0.value.lowerBound.doubleValue(for: .milligramsPerDeciliter)
let upper = $0.value.upperBound.doubleValue(for: .milligramsPerDeciliter)
return TargetEntry(startDate: $0.startDate, endDate: $0.endDate, lowerBound: lower, upperBound: upper)
}
try container.encode(targetMgdl, forKey: .target)
try container.encode(suspendThreshold?.doubleValue(for: .milligramsPerDeciliter), forKey: .suspendThreshold)
try container.encode(maxBolus, forKey: .maxBolus)
try container.encode(maxActiveInsulinMultiplier, forKey: .maxActiveInsulinMultiplier)
try container.encode(maxBasalRate, forKey: .maxBasalRate)
if useIntegralRetrospectiveCorrection {
try container.encode(useIntegralRetrospectiveCorrection, forKey: .useIntegralRetrospectiveCorrection)
}
if !includePositiveVelocityAndRC {
try container.encode(includePositiveVelocityAndRC, forKey: .includePositiveVelocityAndRC)
}
try container.encode(useMidAbsorptionISF, forKey: .useMidAbsorptionISF)
try container.encode(recommendationInsulinType.rawValue, forKey: .recommendationInsulinType)
try container.encode(recommendationType.rawValue, forKey: .recommendationType)
try container.encode(automaticBolusApplicationFactor, forKey: .automaticBolusApplicationFactor)
try container.encode(gradualTransitionsThreshold, forKey: .gradualTransitionsThreshold)
}
private enum CodingKeys: String, CodingKey {
case predictionStart
case glucoseHistory
case doses
case carbEntries
case basal
case sensitivity
case carbRatio
case target
case suspendThreshold
case maxBolus
case maxActiveInsulinMultiplier
case maxBasalRate
case useIntegralRetrospectiveCorrection
case includePositiveVelocityAndRC
case useMidAbsorptionISF
case recommendationInsulinType
case recommendationType
case automaticBolusApplicationFactor
case gradualTransitionsThreshold
}
}
extension AlgorithmInputFixture {
static public func printFixture(_ input: any AlgorithmInput) {
let fixture = AlgorithmInputFixture(
predictionStart: input.predictionStart,
glucoseHistory: input.glucoseHistory.map(\.asFixtureGlucoseSample),
doses: input.doses.map(\.asFixtureInsulinDose),
carbEntries: input.carbEntries.map(\.asFixtureCarbEntry),
basal: input.basal,
sensitivity: input.sensitivity,
carbRatio: input.carbRatio,
target: input.target,
suspendThreshold: input.suspendThreshold,
maxBolus: input.maxBolus,
maxBasalRate: input.maxBasalRate,
useIntegralRetrospectiveCorrection: input.useIntegralRetrospectiveCorrection,
useMidAbsorptionISF: input.useMidAbsorptionISF,
includePositiveVelocityAndRC: input.includePositiveVelocityAndRC,
carbAbsorptionModel: input.carbAbsorptionModel,
recommendationInsulinType: .novolog,
recommendationType: input.recommendationType,
automaticBolusApplicationFactor: input.automaticBolusApplicationFactor,
gradualTransitionsThreshold: input.gradualTransitionsThreshold
)
let encoder = JSONEncoder()
encoder.outputFormatting = [.prettyPrinted, .sortedKeys, .withoutEscapingSlashes]
encoder.dateEncodingStrategy = .iso8601
do {
let encoded = try encoder.encode(fixture)
print(String(data: encoded , encoding: .utf8)!)
} catch {
print("Error encoding fixture: \(error)")
}
}
}
extension GlucoseSampleValue {
var asFixtureGlucoseSample: FixtureGlucoseSample {
return .init(startDate: startDate, quantity: quantity)
}
}
extension InsulinDose {
var asFixtureInsulinDose: FixtureInsulinDose {
return .init(deliveryType: deliveryType, startDate: startDate, endDate: endDate, volume: volume)
}
}
extension CarbEntry {
var asFixtureCarbEntry: FixtureCarbEntry {
return FixtureCarbEntry(
absorptionTime: absorptionTime,
startDate: startDate,
quantity: quantity,
foodType: nil
)
}
}