correcting a bug that takes place at the end of the file (if you reach it ;) )

aalhossary · aalhossary · commit b896458c3be6 · 2012-11-26T15:13:30.000Z
git-svn-id: http://code.open-bio.org/repos/biojava/biojava-live/trunk@9912 7c6358e6-4a41-0410-a743-a5b2a554c398
diff --git a/biojava3-alignment/src/main/java/org/biojava3/alignment/io/StockholmFileParser.java b/biojava3-alignment/src/main/java/org/biojava3/alignment/io/StockholmFileParser.java
@@ -439,7 +439,7 @@ StockholmStructure parse(Scanner scanner) throws ParserException, IOException {
 				}
 
 				linesCount++;
-			} while (line != null);
+			} while (scanner.hasNextLine());
 
 		} catch (IOException e) {
 			e.printStackTrace();

Original file line number	Diff line number	Diff line change
`@@ -439,7 +439,7 @@ StockholmStructure parse(Scanner scanner) throws ParserException, IOException {`
`439`	`439`	`}`
`440`	`440`
`441`	`441`	`linesCount++;`
`442`		`- } while (line != null);`
	`442`	`+ } while (scanner.hasNextLine());`
`443`	`443`
`444`	`444`	`} catch (IOException e) {`
`445`	`445`	`e.printStackTrace();`