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# Violin plot customization

This example demonstrates how to fully customize violin plots. The first plot shows the default style by providing only the data. The second plot first limits what matplotlib draws with additional kwargs. Then a simplified representation of a box plot is drawn on top. Lastly, the styles of the artists of the violins are modified.

For more information on violin plots, the scikit-learn docs have a great section: http://scikit-learn.org/stable/modules/density.html

    import matplotlib.pyplot as plt
    import numpy as np

    def adjacent_values(vals, q1, q3):
        upper_adjacent_value = q3 + (q3 - q1) * 1.5
        upper_adjacent_value = np.clip(upper_adjacent_value, q3, vals[-1])

        lower_adjacent_value = q1 - (q3 - q1) * 1.5
        lower_adjacent_value = np.clip(lower_adjacent_value, vals[0], q1)
        return lower_adjacent_value, upper_adjacent_value

    def set_axis_style(ax, labels):
        ax.get_xaxis().set_tick_params(direction='out')
        ax.xaxis.set_ticks_position('bottom')
        ax.set_xticks(np.arange(1, len(labels) + 1))
        ax.set_xticklabels(labels)
        ax.set_xlim(0.25, len(labels) + 0.75)
        ax.set_xlabel('Sample name')

    # create test data
    np.random.seed(19680801)
    data = [sorted(np.random.normal(0, std, 100)) for std in range(1, 5)]

    fig, (ax1, ax2) = plt.subplots(nrows=1, ncols=2, figsize=(9, 4), sharey=True)

    ax1.set_title('Default violin plot')
    ax1.set_ylabel('Observed values')
    ax1.violinplot(data)

    ax2.set_title('Customized violin plot')
    parts = ax2.violinplot(
            data, showmeans=False, showmedians=False,
            showextrema=False)

    for pc in parts['bodies']:
        pc.set_facecolor('#D43F3A')
        pc.set_edgecolor('black')
        pc.set_alpha(1)

    quartile1, medians, quartile3 = np.percentile(data, [25, 50, 75], axis=1)
    whiskers = np.array([
        adjacent_values(sorted_array, q1, q3)
        for sorted_array, q1, q3 in zip(data, quartile1, quartile3)])
    whiskersMin, whiskersMax = whiskers[:, 0], whiskers[:, 1]

    inds = np.arange(1, len(medians) + 1)
    ax2.scatter(inds, medians, marker='o', color='white', s=30, zorder=3)
    ax2.vlines(inds, quartile1, quartile3, color='k', linestyle='-', lw=5)
    ax2.vlines(inds, whiskersMin, whiskersMax, color='k', linestyle='-', lw=1)

    # set style for the axes
    labels = ['A', 'B', 'C', 'D']
    for ax in [ax1, ax2]:
        set_axis_style(ax, labels)

    plt.subplots_adjust(bottom=0.15, wspace=0.05)
    plt.show()

Total running time of the script: ( 0 minutes 0.086 seconds)

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