fixing problem with custom file uploads in UI

andreasprlic · andreasprlic · commit 898fa6715caa · 2013-02-12T02:23:23.000Z
git-svn-id: http://code.open-bio.org/repos/biojava/biojava-live/trunk@10009 7c6358e6-4a41-0410-a743-a5b2a554c398
diff --git a/biojava3-structure-gui/src/main/java/org/biojava/bio/structure/align/gui/AlignmentCalcDB.java b/biojava3-structure-gui/src/main/java/org/biojava/bio/structure/align/gui/AlignmentCalcDB.java
@@ -102,10 +102,15 @@ public void run() {
 		}
 
 
+		if ( name1.startsWith("file:/"))
+			name1= "CUSTOM";
+		
 		job = new MultiThreadedDBSearch(name1,structure1, outFile, algorithm, nrCPUs, domainSplit);
 
 		AtomCache cache = new AtomCache(config);
 		System.out.println("using cache: " + cache.getPath());
+		System.out.println("name1: " + name1);
+		System.out.println("structure:" + structure1.getName());
 		job.setAtomCache(cache);
 
 		if ( name1.equals("CUSTOM")) {
