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<title>All Classes and Interfaces</title>
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<h1 title="All Classes and Interfaces" class="title">All Classes and Interfaces</h1>
</div>
<div id="all-classes-table">
<div class="table-tabs" role="tablist" aria-orientation="horizontal"><button id="all-classes-table-tab0" role="tab" aria-selected="true" aria-controls="all-classes-table.tabpanel" tabindex="0" onkeydown="switchTab(event)" onclick="show('all-classes-table', 'all-classes-table', 2)" class="active-table-tab">All Classes and Interfaces</button><button id="all-classes-table-tab2" role="tab" aria-selected="false" aria-controls="all-classes-table.tabpanel" tabindex="-1" onkeydown="switchTab(event)" onclick="show('all-classes-table', 'all-classes-table-tab2', 2)" class="table-tab">Classes</button><button id="all-classes-table-tab3" role="tab" aria-selected="false" aria-controls="all-classes-table.tabpanel" tabindex="-1" onkeydown="switchTab(event)" onclick="show('all-classes-table', 'all-classes-table-tab3', 2)" class="table-tab">Enum Classes</button><button id="all-classes-table-tab4" role="tab" aria-selected="false" aria-controls="all-classes-table.tabpanel" tabindex="-1" onkeydown="switchTab(event)" onclick="show('all-classes-table', 'all-classes-table-tab4', 2)" class="table-tab">Record Classes</button></div>
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<div class="summary-table two-column-summary">
<div class="table-header col-first">Class</div>
<div class="table-header col-last">Description</div>
<div class="col-first even-row-color all-classes-table all-classes-table-tab2"><a href="bartMachine/bartMachine_a_base.html" title="class in bartMachine">bartMachine_a_base</a></div>
<div class="col-last even-row-color all-classes-table all-classes-table-tab2">
<div class="block">The base class for any BART implementation.</div>
</div>
<div class="col-first odd-row-color all-classes-table all-classes-table-tab2"><a href="bartMachine/bartMachine_b_hyperparams.html" title="class in bartMachine">bartMachine_b_hyperparams</a></div>
<div class="col-last odd-row-color all-classes-table all-classes-table-tab2">
<div class="block">This portion of the code controls hyperparameters for the BART
algorithm as well as properties and transformations of the response variable.</div>
</div>
<div class="col-first even-row-color all-classes-table all-classes-table-tab2"><a href="bartMachine/bartMachine_c_debug.html" title="class in bartMachine">bartMachine_c_debug</a></div>
<div class="col-last even-row-color all-classes-table all-classes-table-tab2">
<div class="block">This portion of the code used to have many debug functions.</div>
</div>
<div class="col-first odd-row-color all-classes-table all-classes-table-tab2"><a href="bartMachine/bartMachine_d_init.html" title="class in bartMachine">bartMachine_d_init</a></div>
<div class="col-last odd-row-color all-classes-table all-classes-table-tab2">
<div class="block">This portion of the code initializes the Gibbs sampler</div>
</div>
<div class="col-first even-row-color all-classes-table all-classes-table-tab2"><a href="bartMachine/bartMachine_e_gibbs_base.html" title="class in bartMachine">bartMachine_e_gibbs_base</a></div>
<div class="col-last even-row-color all-classes-table all-classes-table-tab2">
<div class="block">This portion of the code performs everything in
the Gibbs sampling except for the posterior sampling itself</div>
</div>
<div class="col-first odd-row-color all-classes-table all-classes-table-tab2"><a href="bartMachine/bartMachine_f_gibbs_internal.html" title="class in bartMachine">bartMachine_f_gibbs_internal</a></div>
<div class="col-last odd-row-color all-classes-table all-classes-table-tab2">
<div class="block">This portion of the code that performs the posterior sampling
in the Gibbs sampler except for the Metropolis-Hastings tree search step</div>
</div>
<div class="col-first even-row-color all-classes-table all-classes-table-tab2"><a href="bartMachine/bartMachine_g_mh.html" title="class in bartMachine">bartMachine_g_mh</a></div>
<div class="col-last even-row-color all-classes-table all-classes-table-tab2">
<div class="block">This portion of the code performs the Metropolis-Hastings tree search step</div>
</div>
<div class="col-first odd-row-color all-classes-table all-classes-table-tab3"><a href="bartMachine/bartMachine_g_mh.Steps.html" title="enum class in bartMachine">bartMachine_g_mh.Steps</a></div>
<div class="col-last odd-row-color all-classes-table all-classes-table-tab3">
<div class="block">the types of steps in the Metropolis-Hastings tree search</div>
</div>
<div class="col-first even-row-color all-classes-table all-classes-table-tab2"><a href="bartMachine/bartMachine_h_eval.html" title="class in bartMachine">bartMachine_h_eval</a></div>
<div class="col-last even-row-color all-classes-table all-classes-table-tab2">
<div class="block">This portion of the code performs the evaluation / prediction on the BART model</div>
</div>
<div class="col-first odd-row-color all-classes-table all-classes-table-tab2"><a href="bartMachine/bartMachine_i_prior_cov_spec.html" title="class in bartMachine">bartMachine_i_prior_cov_spec</a></div>
<div class="col-last odd-row-color all-classes-table all-classes-table-tab2">
<div class="block">This portion of the code implements the informed prior information on covariates feature.</div>
</div>
<div class="col-first even-row-color all-classes-table all-classes-table-tab2"><a href="bartMachine/bartMachineClassification.html" title="class in bartMachine">bartMachineClassification</a></div>
<div class="col-last even-row-color all-classes-table all-classes-table-tab2">
<div class="block">The class that is instantiated to build a binary classification BART model</div>
</div>
<div class="col-first odd-row-color all-classes-table all-classes-table-tab2"><a href="bartMachine/bartMachineClassificationMultThread.html" title="class in bartMachine">bartMachineClassificationMultThread</a></div>
<div class="col-last odd-row-color all-classes-table all-classes-table-tab2">
<div class="block">This class handles the parallelization of many Gibbs chains over many CPU cores
to create one BART regression model.</div>
</div>
<div class="col-first even-row-color all-classes-table all-classes-table-tab2"><a href="bartMachine/bartMachineRegression.html" title="class in bartMachine">bartMachineRegression</a></div>
<div class="col-last even-row-color all-classes-table all-classes-table-tab2">
<div class="block">The class that is instantiated to build a Regression BART model</div>
</div>
<div class="col-first odd-row-color all-classes-table all-classes-table-tab2"><a href="bartMachine/bartMachineRegressionMultThread.html" title="class in bartMachine">bartMachineRegressionMultThread</a></div>
<div class="col-last odd-row-color all-classes-table all-classes-table-tab2">
<div class="block">This class handles the parallelization of many Gibbs chains over many CPU cores
to create one BART regression model.</div>
</div>
<div class="col-first even-row-color all-classes-table all-classes-table-tab2"><a href="bartMachine/bartMachineTreeNode.html" title="class in bartMachine">bartMachineTreeNode</a></div>
<div class="col-last even-row-color all-classes-table all-classes-table-tab2">
<div class="block">The class that stores all the information in one node of the BART trees</div>
</div>
<div class="col-first odd-row-color all-classes-table all-classes-table-tab2"><a href="bartMachine/Classifier.html" title="class in bartMachine">Classifier</a></div>
<div class="col-last odd-row-color all-classes-table all-classes-table-tab2">
<div class="block">The base class for all machine learning / statistical-learning
algorithms.</div>
</div>
<div class="col-first even-row-color all-classes-table all-classes-table-tab3"><a href="bartMachine/Classifier.ErrorTypes.html" title="enum class in bartMachine">Classifier.ErrorTypes</a></div>
<div class="col-last even-row-color all-classes-table all-classes-table-tab3">
<div class="block">a variable that represents the different error calculation types</div>
</div>
<div class="col-first odd-row-color all-classes-table all-classes-table-tab2"><a href="AlgorithmTesting/DataAnalysis.html" title="class in AlgorithmTesting">DataAnalysis</a></div>
<div class="col-last odd-row-color all-classes-table all-classes-table-tab2"> </div>
<div class="col-first even-row-color all-classes-table all-classes-table-tab2"><a href="AlgorithmTesting/DataSetupForCSVFile.html" title="class in AlgorithmTesting">DataSetupForCSVFile</a></div>
<div class="col-last even-row-color all-classes-table all-classes-table-tab2"> </div>
<div class="col-first odd-row-color all-classes-table all-classes-table-tab2"><a href="CustomLogging/LoggingOutputStream.html" title="class in CustomLogging">LoggingOutputStream</a></div>
<div class="col-last odd-row-color all-classes-table all-classes-table-tab2">
<div class="block">\* An OutputStream that writes contents to a Logger upon each call to flush()
\</div>
</div>
<div class="col-first even-row-color all-classes-table all-classes-table-tab2"><a href="OpenSourceExtensions/MersenneTwisterFast.html" title="class in OpenSourceExtensions">MersenneTwisterFast</a></div>
<div class="col-last even-row-color all-classes-table all-classes-table-tab2">
<div class="block">MersenneTwister and MersenneTwisterFast</div>
</div>
<div class="col-first odd-row-color all-classes-table all-classes-table-tab2"><a href="bartMachine/StatToolbox.html" title="class in bartMachine">StatToolbox</a></div>
<div class="col-last odd-row-color all-classes-table all-classes-table-tab2">
<div class="block">This is a class where we're going to put all sorts of useful functions
as a utility-style class</div>
</div>
<div class="col-first even-row-color all-classes-table all-classes-table-tab2"><a href="OpenSourceExtensions/StatUtil.html" title="class in OpenSourceExtensions">StatUtil</a></div>
<div class="col-last even-row-color all-classes-table all-classes-table-tab2">
<div class="block">Utility routines for standard normal calculations used by both regression and
classification code.</div>
</div>
<div class="col-first odd-row-color all-classes-table all-classes-table-tab2"><a href="CustomLogging/StdOutErrLevel.html" title="class in CustomLogging">StdOutErrLevel</a></div>
<div class="col-last odd-row-color all-classes-table all-classes-table-tab2">
<div class="block">\* Class defining 2 new Logging levels, one for STDOUT, one for STDERR,
\* used when multiplexing STDOUT and STDERR into the same rolling log file
\* via the Java Logging APIs.</div>
</div>
<div class="col-first even-row-color all-classes-table all-classes-table-tab2"><a href="CustomLogging/SuperSimpleFormatter.html" title="class in CustomLogging">SuperSimpleFormatter</a></div>
<div class="col-last even-row-color all-classes-table all-classes-table-tab2">
<div class="block">Print a brief summary of the LogRecord in a human readable
format.</div>
</div>
<div class="col-first odd-row-color all-classes-table all-classes-table-tab2"><a href="OpenSourceExtensions/TDoubleHashSetAndArray.html" title="class in OpenSourceExtensions">TDoubleHashSetAndArray</a></div>
<div class="col-last odd-row-color all-classes-table all-classes-table-tab2"> </div>
<div class="col-first even-row-color all-classes-table all-classes-table-tab2"><a href="bartMachine/Tools.html" title="class in bartMachine">Tools</a></div>
<div class="col-last even-row-color all-classes-table all-classes-table-tab2">
<div class="block">A class that contains many generally useful convenience methods.</div>
</div>
<div class="col-first odd-row-color all-classes-table all-classes-table-tab2"><a href="bartMachine/TreeArrayIllustration.html" title="class in bartMachine">TreeArrayIllustration</a></div>
<div class="col-last odd-row-color all-classes-table all-classes-table-tab2">
<div class="block">This class builds illustrations of many trees.</div>
</div>
<div class="col-first even-row-color all-classes-table all-classes-table-tab2"><a href="bartMachine/TreeIllustration.html" title="class in bartMachine">TreeIllustration</a></div>
<div class="col-last even-row-color all-classes-table all-classes-table-tab2">
<div class="block">This class builds illustrations of a tree.</div>
</div>
<div class="col-first odd-row-color all-classes-table all-classes-table-tab2"><a href="bartMachine/TreeIllustration.ImageFileFilter.html" title="class in bartMachine">TreeIllustration.ImageFileFilter</a></div>
<div class="col-last odd-row-color all-classes-table all-classes-table-tab2">
<div class="block">This <a href="https://docs.oracle.com/en/java/javase/25/docs/api/java.base/java/io/FilenameFilter.html" title="class or interface in java.io" class="external-link"><code>file filter</code></a> returns
only image files of type "jpg", "tif", "tiff, and "bmp"</div>
</div>
<div class="col-first even-row-color all-classes-table all-classes-table-tab4"><a href="OpenSourceExtensions/UnorderedPair.html" title="class in OpenSourceExtensions">UnorderedPair<E></a></div>
<div class="col-last even-row-color all-classes-table all-classes-table-tab4">
<div class="block">An unordered immutable pair of elements.</div>
</div>
</div>
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