The PowerShell.Core.Instrumentation.man has actually been migrated to PowerShell-Native repository.
The corresponding manifest resource DLL PowerShell.Core.Instrumentation.dll is now produced in the release build of PowerShell-Native and is shipped in the Microsoft.PowerShell.Native NuGet package.
However, we still need to keep PowerShell.Core.Instrumentation.man in the PowerShell repository because the PowerShell packages for Windows ship the manifest file and RegisterManifest.ps1 for users to register the manifest resource DLL if they want to.
Therefore, when making changes to PowerShell.Core.Instrumentation.man, make sure your changes are made to both repositories -- this file needs to be kept in sync between those 2 repositories.