adding check for lPeptideLinking to isPolymeric

andreasprlic · andreasprlic · commit 8307f59ec140 · 2016-08-17T08:01:30.000-07:00
diff --git a/biojava-structure/src/main/java/org/biojava/nbio/structure/HetatomImpl.java b/biojava-structure/src/main/java/org/biojava/nbio/structure/HetatomImpl.java
@@ -344,7 +344,9 @@ public boolean isPolymeric() {
 
 		PolymerType pt = rt.getPolymerType();
 
-		return PolymerType.PROTEIN_ONLY.contains(pt) || PolymerType.POLYNUCLEOTIDE_ONLY.contains(pt);
+		return PolymerType.PROTEIN_ONLY.contains(pt) ||
+				PolymerType.POLYNUCLEOTIDE_ONLY.contains(pt) ||
+				ResidueType.lPeptideLinking.equals(rt);
 
 
 	}

Original file line number	Diff line number	Diff line change
`@@ -344,7 +344,9 @@ public boolean isPolymeric() {`
`344`	`344`
`345`	`345`	`PolymerType pt = rt.getPolymerType();`
`346`	`346`
`347`		`- return PolymerType.PROTEIN_ONLY.contains(pt) \|\| PolymerType.POLYNUCLEOTIDE_ONLY.contains(pt);`
	`347`	`+ return PolymerType.PROTEIN_ONLY.contains(pt) \|\|`
	`348`	`+ PolymerType.POLYNUCLEOTIDE_ONLY.contains(pt) \|\|`
	`349`	`+ ResidueType.lPeptideLinking.equals(rt);`
`348`	`350`
`349`	`351`
`350`	`352`	`}`