|
15 | 15 | from __future__ import absolute_import |
16 | 16 |
|
17 | 17 | import collections |
18 | | -import itertools |
19 | 18 | import json |
20 | 19 |
|
21 | 20 | try: |
|
38 | 37 | google.api_core.exceptions.ServiceUnavailable, |
39 | 38 | ) |
40 | 39 | _FASTAVRO_REQUIRED = "fastavro is required to parse Avro blocks" |
| 40 | +_PANDAS_REQUIRED = "pandas is required to create a DataFrame" |
41 | 41 |
|
42 | 42 |
|
43 | 43 | class ReadRowsStream(object): |
@@ -156,9 +156,7 @@ def rows(self, read_session): |
156 | 156 | if fastavro is None: |
157 | 157 | raise ImportError(_FASTAVRO_REQUIRED) |
158 | 158 |
|
159 | | - avro_schema, _ = _avro_schema(read_session) |
160 | | - blocks = (_avro_rows(block, avro_schema) for block in self) |
161 | | - return itertools.chain.from_iterable(blocks) |
| 159 | + return ReadRowsIterable(self, read_session) |
162 | 160 |
|
163 | 161 | def to_dataframe(self, read_session, dtypes=None): |
164 | 162 | """Create a :class:`pandas.DataFrame` of all rows in the stream. |
@@ -192,29 +190,186 @@ def to_dataframe(self, read_session, dtypes=None): |
192 | 190 | if fastavro is None: |
193 | 191 | raise ImportError(_FASTAVRO_REQUIRED) |
194 | 192 | if pandas is None: |
195 | | - raise ImportError("pandas is required to create a DataFrame") |
| 193 | + raise ImportError(_PANDAS_REQUIRED) |
196 | 194 |
|
197 | | - if dtypes is None: |
198 | | - dtypes = {} |
| 195 | + return self.rows(read_session).to_dataframe(dtypes=dtypes) |
| 196 | + |
| 197 | + |
| 198 | +class ReadRowsIterable(object): |
| 199 | + """An iterable of rows from a read session. |
| 200 | +
|
| 201 | + Args: |
| 202 | + reader (google.cloud.bigquery_storage_v1beta1.reader.ReadRowsStream): |
| 203 | + A read rows stream. |
| 204 | + read_session (google.cloud.bigquery_storage_v1beta1.types.ReadSession): |
| 205 | + A read session. This is required because it contains the schema |
| 206 | + used in the stream blocks. |
| 207 | + """ |
| 208 | + |
| 209 | + # This class is modelled after the google.cloud.bigquery.table.RowIterator |
| 210 | + # and aims to be API compatible where possible. |
| 211 | + |
| 212 | + def __init__(self, reader, read_session): |
| 213 | + self._status = None |
| 214 | + self._reader = reader |
| 215 | + self._read_session = read_session |
| 216 | + |
| 217 | + @property |
| 218 | + def total_rows(self): |
| 219 | + """int: Number of estimated rows in the current stream. |
| 220 | +
|
| 221 | + May change over time. |
| 222 | + """ |
| 223 | + return getattr(self._status, "estimated_row_count", None) |
| 224 | + |
| 225 | + @property |
| 226 | + def pages(self): |
| 227 | + """A generator of all pages in the stream. |
| 228 | +
|
| 229 | + Returns: |
| 230 | + types.GeneratorType[google.cloud.bigquery_storage_v1beta1.ReadRowsPage]: |
| 231 | + A generator of pages. |
| 232 | + """ |
| 233 | + # Each page is an iterator of rows. But also has num_items, remaining, |
| 234 | + # and to_dataframe. |
| 235 | + avro_schema, column_names = _avro_schema(self._read_session) |
| 236 | + for block in self._reader: |
| 237 | + self._status = block.status |
| 238 | + yield ReadRowsPage(avro_schema, column_names, block) |
| 239 | + |
| 240 | + def __iter__(self): |
| 241 | + """Iterator for each row in all pages.""" |
| 242 | + for page in self.pages: |
| 243 | + for row in page: |
| 244 | + yield row |
| 245 | + |
| 246 | + def to_dataframe(self, dtypes=None): |
| 247 | + """Create a :class:`pandas.DataFrame` of all rows in the stream. |
| 248 | +
|
| 249 | + This method requires the pandas libary to create a data frame and the |
| 250 | + fastavro library to parse row blocks. |
| 251 | +
|
| 252 | + .. warning:: |
| 253 | + DATETIME columns are not supported. They are currently parsed as |
| 254 | + strings in the fastavro library. |
| 255 | +
|
| 256 | + Args: |
| 257 | + dtypes ( \ |
| 258 | + Map[str, Union[str, pandas.Series.dtype]] \ |
| 259 | + ): |
| 260 | + Optional. A dictionary of column names pandas ``dtype``s. The |
| 261 | + provided ``dtype`` is used when constructing the series for |
| 262 | + the column specified. Otherwise, the default pandas behavior |
| 263 | + is used. |
| 264 | +
|
| 265 | + Returns: |
| 266 | + pandas.DataFrame: |
| 267 | + A data frame of all rows in the stream. |
| 268 | + """ |
| 269 | + if pandas is None: |
| 270 | + raise ImportError(_PANDAS_REQUIRED) |
199 | 271 |
|
200 | | - avro_schema, column_names = _avro_schema(read_session) |
201 | 272 | frames = [] |
202 | | - for block in self: |
203 | | - dataframe = _to_dataframe_with_dtypes( |
204 | | - _avro_rows(block, avro_schema), column_names, dtypes |
205 | | - ) |
206 | | - frames.append(dataframe) |
| 273 | + for page in self.pages: |
| 274 | + frames.append(page.to_dataframe(dtypes=dtypes)) |
207 | 275 | return pandas.concat(frames) |
208 | 276 |
|
209 | 277 |
|
210 | | -def _to_dataframe_with_dtypes(rows, column_names, dtypes): |
211 | | - columns = collections.defaultdict(list) |
212 | | - for row in rows: |
213 | | - for column in row: |
214 | | - columns[column].append(row[column]) |
215 | | - for column in dtypes: |
216 | | - columns[column] = pandas.Series(columns[column], dtype=dtypes[column]) |
217 | | - return pandas.DataFrame(columns, columns=column_names) |
| 278 | +class ReadRowsPage(object): |
| 279 | + """An iterator of rows from a read session block. |
| 280 | +
|
| 281 | + Args: |
| 282 | + avro_schema (fastavro.schema): |
| 283 | + A parsed Avro schema, using :func:`fastavro.schema.parse_schema` |
| 284 | + column_names (Tuple[str]]): |
| 285 | + A read session's column names (in requested order). |
| 286 | + block (google.cloud.bigquery_storage_v1beta1.types.ReadRowsResponse): |
| 287 | + A block of data from a read rows stream. |
| 288 | + """ |
| 289 | + |
| 290 | + # This class is modeled after google.api_core.page_iterator.Page and aims |
| 291 | + # to provide API compatibility where possible. |
| 292 | + |
| 293 | + def __init__(self, avro_schema, column_names, block): |
| 294 | + self._avro_schema = avro_schema |
| 295 | + self._column_names = column_names |
| 296 | + self._block = block |
| 297 | + self._iter_rows = None |
| 298 | + self._num_items = None |
| 299 | + self._remaining = None |
| 300 | + |
| 301 | + def _parse_block(self): |
| 302 | + """Parse metadata and rows from the block only once.""" |
| 303 | + if self._iter_rows is not None: |
| 304 | + return |
| 305 | + |
| 306 | + rows = _avro_rows(self._block, self._avro_schema) |
| 307 | + self._num_items = self._block.avro_rows.row_count |
| 308 | + self._remaining = self._block.avro_rows.row_count |
| 309 | + self._iter_rows = iter(rows) |
| 310 | + |
| 311 | + @property |
| 312 | + def num_items(self): |
| 313 | + """int: Total items in the page.""" |
| 314 | + self._parse_block() |
| 315 | + return self._num_items |
| 316 | + |
| 317 | + @property |
| 318 | + def remaining(self): |
| 319 | + """int: Remaining items in the page.""" |
| 320 | + self._parse_block() |
| 321 | + return self._remaining |
| 322 | + |
| 323 | + def __iter__(self): |
| 324 | + """A ``ReadRowsPage`` is an iterator.""" |
| 325 | + return self |
| 326 | + |
| 327 | + def next(self): |
| 328 | + """Get the next row in the page.""" |
| 329 | + self._parse_block() |
| 330 | + if self._remaining > 0: |
| 331 | + self._remaining -= 1 |
| 332 | + return six.next(self._iter_rows) |
| 333 | + |
| 334 | + # Alias needed for Python 2/3 support. |
| 335 | + __next__ = next |
| 336 | + |
| 337 | + def to_dataframe(self, dtypes=None): |
| 338 | + """Create a :class:`pandas.DataFrame` of rows in the page. |
| 339 | +
|
| 340 | + This method requires the pandas libary to create a data frame and the |
| 341 | + fastavro library to parse row blocks. |
| 342 | +
|
| 343 | + .. warning:: |
| 344 | + DATETIME columns are not supported. They are currently parsed as |
| 345 | + strings in the fastavro library. |
| 346 | +
|
| 347 | + Args: |
| 348 | + dtypes ( \ |
| 349 | + Map[str, Union[str, pandas.Series.dtype]] \ |
| 350 | + ): |
| 351 | + Optional. A dictionary of column names pandas ``dtype``s. The |
| 352 | + provided ``dtype`` is used when constructing the series for |
| 353 | + the column specified. Otherwise, the default pandas behavior |
| 354 | + is used. |
| 355 | +
|
| 356 | + Returns: |
| 357 | + pandas.DataFrame: |
| 358 | + A data frame of all rows in the stream. |
| 359 | + """ |
| 360 | + if pandas is None: |
| 361 | + raise ImportError(_PANDAS_REQUIRED) |
| 362 | + |
| 363 | + if dtypes is None: |
| 364 | + dtypes = {} |
| 365 | + |
| 366 | + columns = collections.defaultdict(list) |
| 367 | + for row in self: |
| 368 | + for column in row: |
| 369 | + columns[column].append(row[column]) |
| 370 | + for column in dtypes: |
| 371 | + columns[column] = pandas.Series(columns[column], dtype=dtypes[column]) |
| 372 | + return pandas.DataFrame(columns, columns=self._column_names) |
218 | 373 |
|
219 | 374 |
|
220 | 375 | def _avro_schema(read_session): |
@@ -242,12 +397,13 @@ def _avro_rows(block, avro_schema): |
242 | 397 | """Parse all rows in a stream block. |
243 | 398 |
|
244 | 399 | Args: |
245 | | - read_session ( \ |
246 | | - ~google.cloud.bigquery_storage_v1beta1.types.ReadSession \ |
| 400 | + block ( \ |
| 401 | + ~google.cloud.bigquery_storage_v1beta1.types.ReadRowsResponse \ |
247 | 402 | ): |
248 | | - The read session associated with this read rows stream. This |
249 | | - contains the schema, which is required to parse the data |
250 | | - blocks. |
| 403 | + A block containing Avro bytes to parse into rows. |
| 404 | + avro_schema (fastavro.schema): |
| 405 | + A parsed Avro schema, used to deserialized the bytes in the |
| 406 | + block. |
251 | 407 |
|
252 | 408 | Returns: |
253 | 409 | Iterable[Mapping]: |
|
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