-
Notifications
You must be signed in to change notification settings - Fork 0
Expand file tree
/
Copy pathautoencoder.py
More file actions
289 lines (242 loc) · 12.8 KB
/
autoencoder.py
File metadata and controls
289 lines (242 loc) · 12.8 KB
1
2
3
4
5
6
7
8
9
10
11
12
13
14
15
16
17
18
19
20
21
22
23
24
25
26
27
28
29
30
31
32
33
34
35
36
37
38
39
40
41
42
43
44
45
46
47
48
49
50
51
52
53
54
55
56
57
58
59
60
61
62
63
64
65
66
67
68
69
70
71
72
73
74
75
76
77
78
79
80
81
82
83
84
85
86
87
88
89
90
91
92
93
94
95
96
97
98
99
100
101
102
103
104
105
106
107
108
109
110
111
112
113
114
115
116
117
118
119
120
121
122
123
124
125
126
127
128
129
130
131
132
133
134
135
136
137
138
139
140
141
142
143
144
145
146
147
148
149
150
151
152
153
154
155
156
157
158
159
160
161
162
163
164
165
166
167
168
169
170
171
172
173
174
175
176
177
178
179
180
181
182
183
184
185
186
187
188
189
190
191
192
193
194
195
196
197
198
199
200
201
202
203
204
205
206
207
208
209
210
211
212
213
214
215
216
217
218
219
220
221
222
223
224
225
226
227
228
229
230
231
232
233
234
235
236
237
238
239
240
241
242
243
244
245
246
247
248
249
250
251
252
253
254
255
256
257
258
259
260
261
262
263
264
265
266
267
268
269
270
271
272
273
274
275
276
277
278
279
280
281
282
283
284
285
286
287
288
289
from __future__ import annotations
import pickle
from datetime import datetime
from os import makedirs
from os.path import join
from typing import Optional, Tuple, Dict, Any
import numpy as np
import tensorflow as tf
from tensorflow.keras import Model
from tensorflow.keras import backend as K
from tensorflow.keras.layers import Input, Conv2D, Flatten, Dense, Reshape, Conv2DTranspose, Lambda, LSTM
from tensorflow.keras.optimizers import Adam
from tensorflow.python.keras import losses, metrics
from tensorflow.python.keras.callbacks import TensorBoard, History
from tensorflow.python.keras.engine.base_layer import Layer
from tensorflow.python.keras.losses import LossFunctionWrapper
from tensorflow.python.keras.utils.vis_utils import plot_model
from config import cfg
tf.compat.v1.disable_eager_execution()
# NOTE: Can be upgraded to introduce Kapre integration.
class VAE:
"""
VAE represents a Deep Convolutional variational autoencoder architecture
with mirrored encoder and decoder components.
"""
def __init__(self,
input_shape: Tuple[int, int, int] = cfg.SPECTROGRAM_SHAPE,
latent_space_dim: int = cfg.LATENT_SPACE_DIM,
is_variational: bool = cfg.IS_VARIATIONAL,
reconstruction_loss_weight: float = cfg.RECONSTRUCTION_LOSS_WEIGHT,
num_hidden_conv_layers: int = cfg.NUM_HIDDEN_CONV_LAYERS,
filter_size_conv_layers: int = cfg.FILTER_SIZE_CONV_LAYERS,
conv_params_middle: Optional[Dict[str, Any]] = None,
conv_params_end: Optional[Dict[str, Any]] = None,
use_mock_encoder: bool = cfg.USE_MOCK_ENCODER,
use_mock_decoder: bool = cfg.USE_MOCK_DECODER,
clip_prediction: bool = cfg.CLIP_PREDICTION,
loss_squared: bool = cfg.LOSS_SQUARED,
loss_mse_linear_weight: Optional[Tuple[float, float]] = cfg.LOSS_MSE_LINEAR_WEIGHT,
use_lstm: bool = cfg.USE_LSTM,
):
if conv_params_middle is None:
conv_params_middle = cfg.CONV_PARAMS_MIDDLE
if conv_params_end is None:
conv_params_end = cfg.CONV_PARAMS_END
assert len(input_shape) == 3
# Input parameters
self.input_shape: Tuple[int, int, int] = input_shape
self.latent_space_dim: int = latent_space_dim
self._is_variational: bool = is_variational
self._reconstruction_loss_weight: float = reconstruction_loss_weight if self._is_variational else 0.
self._num_hidden_conv_layers: int = num_hidden_conv_layers
self._filter_size_conv_layers: int = filter_size_conv_layers
self._conv_params_middle: Dict[str, Any] = conv_params_middle
self._conv_params_end: Dict[str, Any] = conv_params_end
self._use_mock_encoder: bool = use_mock_encoder
self._use_mock_decoder: bool = use_mock_decoder
self._clip_prediction: bool = clip_prediction
self._loss_squared: bool = loss_squared
self._loss_mse_linear_weight: Optional[Tuple[float, float]] = loss_mse_linear_weight
self._loss_mse_weight_factor: np.ndarray = \
np.linspace(self._loss_mse_linear_weight[0], self._loss_mse_linear_weight[1], self.input_shape[0])[
None, ..., None, None] if self._loss_mse_linear_weight is not None else np.ones((1, *self.input_shape))
self._use_lstm: bool = use_lstm
# Build model
self.encoder: Optional[Model] = None
self.decoder: Optional[Model] = None
self.model: Optional[Model] = None
self._encoder_input_layer: Input = None
self._loss_mse: LossFunctionWrapper = losses.MeanSquaredError()
self._loss_kl: LossFunctionWrapper = losses.KLDivergence()
self._build()
# Set TensorBoard
self._log_dir: str = join(cfg.LOGS_DIR, f"model_{datetime.now().strftime('%y%m%d')}")
self._tensorboard_callback: TensorBoard = tf.keras.callbacks.TensorBoard(log_dir=self._log_dir,
histogram_freq=1)
def summary(self) -> None:
self.model.summary(line_length=100)
print()
self.encoder.summary(line_length=100)
print()
self.decoder.summary(line_length=100)
print()
def compile(self, learning_rate: float) -> None:
if cfg.VERBOSE:
print(f"Compiling VAE with {learning_rate=}")
self.model.compile(optimizer=Adam(learning_rate=learning_rate),
loss=self._calculate_combined_loss,
metrics=[metrics.MeanSquaredError(),
metrics.KLDivergence()])
def _calculate_combined_loss(self, y_target: np.ndarray, y_predicted: np.ndarray) -> float:
if self._loss_squared:
y_target = tf.math.square(y_target)
y_predicted = tf.math.square(y_predicted)
y_target = y_target * self._loss_mse_weight_factor
y_predicted = y_predicted * self._loss_mse_weight_factor
return self._loss_mse(y_target, y_predicted) + \
self._loss_kl(y_target, y_predicted) * self._reconstruction_loss_weight
def train(self, x_train: np.ndarray, batch_size: int, num_epochs: int, should_callback: bool = True) -> History:
history = self.model.fit(x=x_train,
y=x_train,
batch_size=batch_size,
epochs=num_epochs,
shuffle=True,
callbacks=[self._tensorboard_callback] if should_callback else None,
verbose=cfg.VERBOSE,
)
return history
def reconstruct(self, images: np.ndarray) -> Tuple[np.ndarray, np.ndarray]:
assert images.shape[1:] == self.input_shape
latent_representations = self.encoder.predict(images)
reconstructed_images = self.decoder.predict(latent_representations)
if self._clip_prediction:
reconstructed_images = np.clip(reconstructed_images, a_min=cfg.NORM_RANGE[0], a_max=cfg.NORM_RANGE[1])
return reconstructed_images, latent_representations
def save(self) -> None:
print(f"tensorboard --logdir {self._tensorboard_callback.log_dir}")
print(f"Model saved to {self._log_dir}")
makedirs(self._log_dir, exist_ok=True)
# Save weights
self.model.save_weights(join(self._log_dir, "weights.h5"))
# Save parameters
self._save_parameters()
def _save_parameters(self):
parameters = {
'input_shape': self.input_shape,
'latent_space_dim': self.latent_space_dim,
'is_variational': self._is_variational,
'reconstruction_loss_weight': self._reconstruction_loss_weight,
'num_hidden_conv_layers': self._num_hidden_conv_layers,
'filter_size_conv_layers': self._filter_size_conv_layers,
'conv_params_middle': self._conv_params_middle,
'conv_params_end': self._conv_params_end,
'use_mock_encoder': self._use_mock_encoder,
'use_mock_decoder': self._use_mock_decoder,
'clip_prediction': self._clip_prediction,
'loss_squared': self._loss_squared,
'loss_mse_linear_weight': self._loss_mse_linear_weight,
'use_lstm': self._use_lstm,
}
with open(join(self._log_dir, "parameters.pkl"), "wb") as f:
pickle.dump(parameters, f)
@classmethod
def load(cls, save_folder: str) -> VAE:
save_folder = join(cfg.LOGS_DIR, save_folder)
with open(join(save_folder, "parameters.pkl"), "rb") as f:
parameters = pickle.load(f)
vae = VAE(**parameters)
weights_path = join(save_folder, "weights.h5")
vae.model.load_weights(weights_path)
print(f"Loaded VAE from {save_folder}")
return vae
def _build(self) -> None:
self._build_encoder()
self._build_decoder()
self._build_autoencoder()
def _build_autoencoder(self) -> None:
decoder_output = self.decoder(self.encoder(self._encoder_input_layer))
self.model = Model(self._encoder_input_layer, decoder_output, name="vae")
def _build_encoder(self) -> None:
self._encoder_input_layer = Input(shape=self.input_shape, name='encoder_input')
# Convolution layers
x = Conv2D(
filters=self._filter_size_conv_layers,
**self._conv_params_middle,
name="encoder_conv2d_1")(self._encoder_input_layer)
for i in range(self._num_hidden_conv_layers - 1):
x = Conv2D(
filters=self._filter_size_conv_layers,
**self._conv_params_middle,
name=f"encoder_conv2d_{i + 2}")(x)
self._smallest_convolution_shape = x.shape[1:] # Calculate value for the decoder to use
if self._use_mock_encoder:
x = Flatten(name="mock_encoder_flatten")(self._encoder_input_layer)
bottleneck = Dense(self.latent_space_dim, trainable=False, name="mock_encoder_dense")(x)
self.encoder = Model(self._encoder_input_layer, bottleneck, name="mock_encoder")
else:
if self._use_lstm:
if x.shape[1] > 1:
x = Conv2D(
filters=self._filter_size_conv_layers,
kernel_size=(x.shape[1], 1),
strides=(x.shape[1], 1),
padding=self._conv_params_middle['padding'],
activation=self._conv_params_middle['activation'],
kernel_initializer=self._conv_params_middle['kernel_initializer'],
name=f"encoder_conv2d_last")(x)
x = Reshape(x.shape[2:], name="encoder_reshape_lstm")(x)
x = LSTM(128, return_sequences=False, name='encoder_lstm')(x)
x = Flatten(name="encoder_flatten_1")(x)
bottleneck = self._add_bottleneck(x)
self.encoder = Model(self._encoder_input_layer, bottleneck, name="encoder")
def _add_bottleneck(self, x: Layer) -> Layer:
"""Flatten data and add bottleneck with Gaussian sampling (Dense layer)."""
if self._is_variational:
# Implement a VARIATIONAL autoencoder
self.mu = Dense(self.latent_space_dim, name="encoder_mu")(x)
self.log_variance = Dense(self.latent_space_dim, name="encoder_log_variance")(x)
def _sample_point_from_normal_distribution(args):
mu, log_variance = args
epsilon = K.random_normal(shape=K.shape(mu), mean=0., stddev=1.)
sampled_point = mu + K.exp(log_variance / 2) * epsilon
return sampled_point
x = Lambda(_sample_point_from_normal_distribution, name="encoder_output")([self.mu, self.log_variance])
else:
# Implement a NON-VARIATIONAL autoencoder
x = Dense(self.latent_space_dim, name="encoder_output")(x)
return x
def _build_decoder(self) -> None:
decoder_input = Input(shape=(self.latent_space_dim,), name='decoder_input')
if self._use_mock_decoder:
x = Dense(np.product(self.input_shape), trainable=False, name="mock_decoder_dense")(decoder_input)
x = Reshape(self.input_shape, name="mock_decoder_reshape")(x)
self.decoder = Model(decoder_input, x, name="mock_decoder")
else:
x = Dense(np.product(self._smallest_convolution_shape), name="decoder_dense_1")(decoder_input)
x = Reshape(self._smallest_convolution_shape, name="decoder_reshape_1")(x)
# Convolution layers
for i in range(self._num_hidden_conv_layers-1):
x = Conv2DTranspose(
filters=self._filter_size_conv_layers,
**self._conv_params_middle,
name=f"decoder_conv2d_t_{i + 1}")(x)
x = Conv2DTranspose(
filters=self.input_shape[-1],
**self._conv_params_middle,
name=f"decoder_conv2d_t_{self._num_hidden_conv_layers}")(x)
x = Conv2D(
filters=self.input_shape[-1],
**self._conv_params_end,
name="decoder_output")(x)
self.decoder = Model(decoder_input, x, name="decoder")
def _plot_architecture(self):
plot_model(self.model, to_file='ae_model.png', **cfg.ARCH_PLOT_ARGS)
plot_model(self.model, to_file='ae_nested_model.png', expand_nested=False, **cfg.ARCH_PLOT_ARGS)
plot_model(self.encoder, to_file='encoder_model.png', **cfg.ARCH_PLOT_ARGS)
plot_model(self.decoder, to_file='decoder_model.png', **cfg.ARCH_PLOT_ARGS)
if __name__ == '__main__':
autoencoder = VAE(
input_shape=cfg.SPECTROGRAM_SHAPE, # (Frequency, Time, Channels),
)
autoencoder.summary()