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medfilt.cpp
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/*******************************************************
* Copyright (c) 2014, ArrayFire
* All rights reserved.
*
* This file is distributed under 3-clause BSD license.
* The complete license agreement can be obtained at:
* http://arrayfire.com/licenses/BSD-3-Clause
********************************************************/
#include <arrayfire.h>
#include <gtest/gtest.h>
#include <testHelpers.hpp>
#include <af/dim4.hpp>
#include <af/traits.hpp>
#include <string>
#include <vector>
using af::dim4;
using af::dtype_traits;
using std::abs;
using std::endl;
using std::string;
using std::vector;
template<typename T>
class MedianFilter : public ::testing::Test {
public:
virtual void SetUp() {}
};
template<typename T>
class MedianFilter1d : public ::testing::Test {
public:
virtual void SetUp() {}
};
// create a list of types to be tested
typedef ::testing::Types<float, double, int, uint, char, uchar, short, ushort>
TestTypes;
// register the type list
TYPED_TEST_CASE(MedianFilter, TestTypes);
TYPED_TEST_CASE(MedianFilter1d, TestTypes);
template<typename T>
void medfiltTest(string pTestFile, dim_t w_len, dim_t w_wid,
af_border_type pad) {
SUPPORTED_TYPE_CHECK(T);
vector<dim4> numDims;
vector<vector<T> > in;
vector<vector<T> > tests;
readTests<T, T, int>(pTestFile, numDims, in, tests);
dim4 dims = numDims[0];
af_array outArray = 0;
af_array inArray = 0;
ASSERT_SUCCESS(af_create_array(&inArray, &(in[0].front()), dims.ndims(),
dims.get(),
(af_dtype)dtype_traits<T>::af_type));
ASSERT_SUCCESS(af_medfilt2(&outArray, inArray, w_len, w_wid, pad));
vector<T> outData(dims.elements());
ASSERT_SUCCESS(af_get_data_ptr((void*)outData.data(), outArray));
vector<T> currGoldBar = tests[0];
size_t nElems = currGoldBar.size();
for (size_t elIter = 0; elIter < nElems; ++elIter) {
ASSERT_EQ(currGoldBar[elIter], outData[elIter])
<< "at: " << elIter << endl;
}
// cleanup
ASSERT_SUCCESS(af_release_array(inArray));
ASSERT_SUCCESS(af_release_array(outArray));
}
TYPED_TEST(MedianFilter, ZERO_PAD_3x3) {
medfiltTest<TypeParam>(
string(TEST_DIR "/medianfilter/zero_pad_3x3_window.test"), 3, 3,
AF_PAD_ZERO);
}
TYPED_TEST(MedianFilter, SYMMETRIC_PAD_3x3) {
medfiltTest<TypeParam>(
string(TEST_DIR "/medianfilter/symmetric_pad_3x3_window.test"), 3, 3,
AF_PAD_SYM);
}
TYPED_TEST(MedianFilter, BATCH_ZERO_PAD_3x3) {
medfiltTest<TypeParam>(
string(TEST_DIR "/medianfilter/batch_zero_pad_3x3_window.test"), 3, 3,
AF_PAD_ZERO);
}
TYPED_TEST(MedianFilter, BATCH_SYMMETRIC_PAD_3x3) {
medfiltTest<TypeParam>(
string(TEST_DIR "/medianfilter/batch_symmetric_pad_3x3_window.test"), 3,
3, AF_PAD_SYM);
}
template<typename T>
void medfilt1_Test(string pTestFile, dim_t w_wid, af_border_type pad) {
SUPPORTED_TYPE_CHECK(T);
vector<dim4> numDims;
vector<vector<T> > in;
vector<vector<T> > tests;
readTests<T, T, int>(pTestFile, numDims, in, tests);
dim4 dims = numDims[0];
af_array outArray = 0;
af_array inArray = 0;
ASSERT_SUCCESS(af_create_array(&inArray, &(in[0].front()), dims.ndims(),
dims.get(),
(af_dtype)dtype_traits<T>::af_type));
ASSERT_SUCCESS(af_medfilt1(&outArray, inArray, w_wid, pad));
vector<T> outData(dims.elements());
ASSERT_SUCCESS(af_get_data_ptr((void*)outData.data(), outArray));
vector<T> currGoldBar = tests[0];
size_t nElems = currGoldBar.size();
for (size_t elIter = 0; elIter < nElems; ++elIter) {
ASSERT_EQ(currGoldBar[elIter], outData[elIter])
<< "at: " << elIter << endl;
}
// cleanup
ASSERT_SUCCESS(af_release_array(inArray));
ASSERT_SUCCESS(af_release_array(outArray));
}
TYPED_TEST(MedianFilter1d, ZERO_PAD_3) {
medfilt1_Test<TypeParam>(
string(TEST_DIR "/medianfilter/zero_pad_3x1_window.test"), 3,
AF_PAD_ZERO);
}
TYPED_TEST(MedianFilter1d, SYMMETRIC_PAD_3) {
medfilt1_Test<TypeParam>(
string(TEST_DIR "/medianfilter/symmetric_pad_3x1_window.test"), 3,
AF_PAD_SYM);
}
TYPED_TEST(MedianFilter1d, BATCH_ZERO_PAD_3) {
medfilt1_Test<TypeParam>(
string(TEST_DIR "/medianfilter/batch_zero_pad_3x1_window.test"), 3,
AF_PAD_ZERO);
}
TYPED_TEST(MedianFilter1d, BATCH_SYMMETRIC_PAD_3) {
medfilt1_Test<TypeParam>(
string(TEST_DIR "/medianfilter/batch_symmetric_pad_3x1_window.test"), 3,
AF_PAD_SYM);
}
template<typename T, bool isColor>
void medfiltImageTest(string pTestFile, dim_t w_len, dim_t w_wid) {
SUPPORTED_TYPE_CHECK(T);
if (noImageIOTests()) return;
vector<dim4> inDims;
vector<string> inFiles;
vector<dim_t> outSizes;
vector<string> outFiles;
readImageTests(pTestFile, inDims, inFiles, outSizes, outFiles);
size_t testCount = inDims.size();
for (size_t testId = 0; testId < testCount; ++testId) {
af_array inArray = 0;
af_array outArray = 0;
af_array goldArray = 0;
dim_t nElems = 0;
inFiles[testId].insert(0, string(TEST_DIR "/medianfilter/"));
outFiles[testId].insert(0, string(TEST_DIR "/medianfilter/"));
ASSERT_SUCCESS(
af_load_image(&inArray, inFiles[testId].c_str(), isColor));
ASSERT_SUCCESS(
af_load_image(&goldArray, outFiles[testId].c_str(), isColor));
ASSERT_SUCCESS(af_get_elements(&nElems, goldArray));
ASSERT_SUCCESS(
af_medfilt2(&outArray, inArray, w_len, w_wid, AF_PAD_ZERO));
vector<T> outData(nElems);
ASSERT_SUCCESS(af_get_data_ptr((void*)outData.data(), outArray));
vector<T> goldData(nElems);
ASSERT_SUCCESS(af_get_data_ptr((void*)goldData.data(), goldArray));
ASSERT_EQ(true, compareArraysRMSD(nElems, goldData.data(),
outData.data(), 0.018f));
ASSERT_SUCCESS(af_release_array(inArray));
ASSERT_SUCCESS(af_release_array(outArray));
ASSERT_SUCCESS(af_release_array(goldArray));
}
}
template<typename T>
void medfiltInputTest(void) {
SUPPORTED_TYPE_CHECK(T);
af_array inArray = 0;
af_array outArray = 0;
vector<T> in(100, 1);
// Check for 1D inputs -> medfilt1
dim4 dims = dim4(100, 1, 1, 1);
ASSERT_SUCCESS(af_create_array(&inArray, &in.front(), dims.ndims(),
dims.get(),
(af_dtype)dtype_traits<T>::af_type));
ASSERT_SUCCESS(af_medfilt2(&outArray, inArray, 1, 1, AF_PAD_ZERO));
bool medfilt1;
ASSERT_SUCCESS(af_is_vector(&medfilt1, outArray));
ASSERT_EQ(true, medfilt1);
ASSERT_SUCCESS(af_release_array(inArray));
ASSERT_SUCCESS(af_release_array(outArray));
}
TYPED_TEST(MedianFilter, InvalidArray) { medfiltInputTest<TypeParam>(); }
template<typename T>
void medfiltWindowTest(void) {
SUPPORTED_TYPE_CHECK(T);
af_array inArray = 0;
af_array outArray = 0;
vector<T> in(100, 1);
// Check for 4D inputs
dim4 dims(10, 10, 1, 1);
ASSERT_SUCCESS(af_create_array(&inArray, &in.front(), dims.ndims(),
dims.get(),
(af_dtype)dtype_traits<T>::af_type));
ASSERT_EQ(AF_ERR_ARG, af_medfilt2(&outArray, inArray, 3, 5, AF_PAD_ZERO));
ASSERT_SUCCESS(af_release_array(inArray));
}
TYPED_TEST(MedianFilter, InvalidWindow) { medfiltWindowTest<TypeParam>(); }
template<typename T>
void medfilt1d_WindowTest(void) {
SUPPORTED_TYPE_CHECK(T);
af_array inArray = 0;
af_array outArray = 0;
vector<T> in(100, 1);
// Check for 4D inputs
dim4 dims(10, 10, 1, 1);
ASSERT_SUCCESS(af_create_array(&inArray, &in.front(), dims.ndims(),
dims.get(),
(af_dtype)dtype_traits<T>::af_type));
ASSERT_EQ(AF_ERR_ARG, af_medfilt1(&outArray, inArray, -1, AF_PAD_ZERO));
ASSERT_SUCCESS(af_release_array(inArray));
}
TYPED_TEST(MedianFilter1d, InvalidWindow) { medfilt1d_WindowTest<TypeParam>(); }
template<typename T>
void medfiltPadTest(void) {
SUPPORTED_TYPE_CHECK(T);
af_array inArray = 0;
af_array outArray = 0;
vector<T> in(100, 1);
// Check for 4D inputs
dim4 dims(10, 10, 1, 1);
ASSERT_SUCCESS(af_create_array(&inArray, &in.front(), dims.ndims(),
dims.get(),
(af_dtype)dtype_traits<T>::af_type));
ASSERT_EQ(AF_ERR_ARG,
af_medfilt2(&outArray, inArray, 3, 3, af_border_type(3)));
ASSERT_EQ(AF_ERR_ARG,
af_medfilt2(&outArray, inArray, 3, 3, af_border_type(-1)));
ASSERT_SUCCESS(af_release_array(inArray));
}
TYPED_TEST(MedianFilter, InvalidPadType) { medfiltPadTest<TypeParam>(); }
template<typename T>
void medfilt1d_PadTest(void) {
SUPPORTED_TYPE_CHECK(T);
af_array inArray = 0;
af_array outArray = 0;
vector<T> in(100, 1);
// Check for 4D inputs
dim4 dims(10, 10, 1, 1);
ASSERT_SUCCESS(af_create_array(&inArray, &in.front(), dims.ndims(),
dims.get(),
(af_dtype)dtype_traits<T>::af_type));
ASSERT_EQ(AF_ERR_ARG,
af_medfilt1(&outArray, inArray, 3, af_border_type(3)));
ASSERT_EQ(AF_ERR_ARG,
af_medfilt1(&outArray, inArray, 3, af_border_type(-1)));
ASSERT_SUCCESS(af_release_array(inArray));
}
TYPED_TEST(MedianFilter1d, InvalidPadType) { medfilt1d_PadTest<TypeParam>(); }
//////////////////////////////////// CPP ////////////////////////////////////
//
using af::array;
TEST(MedianFilter, CPP) {
const dim_t w_len = 3;
const dim_t w_wid = 3;
vector<dim4> numDims;
vector<vector<float> > in;
vector<vector<float> > tests;
readTests<float, float, int>(
string(TEST_DIR "/medianfilter/batch_symmetric_pad_3x3_window.test"),
numDims, in, tests);
dim4 dims = numDims[0];
array input(dims, &(in[0].front()));
array output = medfilt(input, w_len, w_wid, AF_PAD_SYM);
vector<float> outData(dims.elements());
output.host((void*)outData.data());
vector<float> currGoldBar = tests[0];
size_t nElems = currGoldBar.size();
for (size_t elIter = 0; elIter < nElems; ++elIter) {
ASSERT_EQ(currGoldBar[elIter], outData[elIter])
<< "at: " << elIter << endl;
}
}
TEST(MedianFilter1d, CPP) {
const dim_t w_wid = 3;
vector<dim4> numDims;
vector<vector<float> > in;
vector<vector<float> > tests;
readTests<float, float, int>(
string(TEST_DIR "/medianfilter/batch_symmetric_pad_3x1_window.test"),
numDims, in, tests);
dim4 dims = numDims[0];
array input(dims, &(in[0].front()));
array output = medfilt1(input, w_wid, AF_PAD_SYM);
vector<float> outData(dims.elements());
output.host((void*)outData.data());
vector<float> currGoldBar = tests[0];
size_t nElems = currGoldBar.size();
for (size_t elIter = 0; elIter < nElems; ++elIter) {
ASSERT_EQ(currGoldBar[elIter], outData[elIter])
<< "at: " << elIter << endl;
}
}
TEST(MedianFilter, Docs) {
float input[] = {1.0000, 2.0000, 3.0000, 4.0000, 5.0000, 6.0000,
7.0000, 8.0000, 9.0000, 10.0000, 11.0000, 12.0000,
13.0000, 14.0000, 15.0000, 16.0000};
float gold[] = {0.0000, 2.0000, 3.0000, 0.0000, 2.0000, 6.0000,
7.0000, 4.0000, 6.0000, 10.0000, 11.0000, 8.0000,
0.0000, 10.0000, 11.0000, 0.0000};
//![ex_image_medfilt]
array a = array(4, 4, input);
// af_print(a);
// a = 1.0000 5.0000 9.0000 13.0000
// 2.0000 6.0000 10.0000 14.0000
// 3.0000 7.0000 11.0000 15.0000
// 4.0000 8.0000 12.0000 16.0000
array b = medfilt(a, 3, 3, AF_PAD_ZERO);
// af_print(b);
// b= 0.0000 2.0000 6.0000 0.0000
// 2.0000 6.0000 10.0000 10.0000
// 3.0000 7.0000 11.0000 11.0000
// 0.0000 4.0000 8.0000 0.0000
//![ex_image_medfilt]
float output[16];
b.host((void*)output);
for (int i = 0; i < 16; ++i) {
ASSERT_EQ(output[i], gold[i]) << "output mismatch at i = " << i << endl;
}
}
using af::constant;
using af::iota;
using af::max;
using af::medfilt;
using af::medfilt1;
using af::seq;
using af::span;
TEST(MedianFilter, GFOR) {
dim4 dims = dim4(10, 10, 3);
array A = iota(dims);
array B = constant(0, dims);
gfor(seq ii, 3) { B(span, span, ii) = medfilt(A(span, span, ii)); }
for (int ii = 0; ii < 3; ii++) {
array c_ii = medfilt(A(span, span, ii));
array b_ii = B(span, span, ii);
ASSERT_EQ(max<double>(abs(c_ii - b_ii)) < 1E-5, true);
}
}
TEST(MedianFilter1d, GFOR) {
dim4 dims = dim4(10, 10, 3);
array A = iota(dims);
array B = constant(0, dims);
gfor(seq ii, 3) { B(span, ii) = medfilt1(A(span, ii)); }
for (int ii = 0; ii < 3; ii++) {
array c_ii = medfilt1(A(span, ii));
array b_ii = B(span, ii);
ASSERT_EQ(max<double>(abs(c_ii - b_ii)) < 1E-5, true);
}
}