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matrix.cpp
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587 lines (518 loc) · 18.3 KB
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#include "multiverso/table/matrix.h"
#include <vector>
#include <algorithm>
#include "multiverso/io/io.h"
#include "multiverso/multiverso.h"
#include "multiverso/util/log.h"
#include "multiverso/util/quantization_util.h"
#include "multiverso/updater/updater.h"
namespace multiverso {
template <typename T>
MatrixWorker<T>::MatrixWorker(const MatrixOption<T>& option) :
MatrixWorker(option.num_row, option.num_col, option.is_sparse) {}
template <typename T>
MatrixWorker<T>::MatrixWorker(integer_t num_row, integer_t num_col, bool is_sparse) :
WorkerTable(), num_row_(num_row), num_col_(num_col), is_sparse_(is_sparse) {
row_size_ = num_col * sizeof(T);
get_reply_count_ = 0;
num_server_ = MV_NumServers();
// compute row offsets in all servers
server_offsets_.push_back(0);
integer_t length = num_row / num_server_;
integer_t offset = length;
if (length > 0) {
int i = 0;
while (length > 0 && offset < num_row && ++i < num_server_) {
server_offsets_.push_back(offset);
offset += length;
}
server_offsets_.push_back(num_row);
}
else {
int i = 0;
offset += 1;
while (offset < num_row && ++i < num_server_) {
server_offsets_.push_back(offset);
offset += 1;
}
server_offsets_.push_back(num_row);
}
// using actual number of servers
num_server_ = static_cast<int>(server_offsets_.size() - 1);
Log::Debug("[Init] worker = %d, type = matrixTable, size = [ %d x %d ].\n",
MV_Rank(), num_row, num_col);
if (is_sparse_)
Log::Debug("[Init] worker = %d, with sparse updater.\n", MV_Rank());
row_index_ = new T*[num_row_ + 1];
}
template <typename T>
MatrixWorker<T>::~MatrixWorker() {
server_offsets_.clear();
delete[]row_index_;
}
template <typename T>
void MatrixWorker<T>::Get(T* data, size_t size,
const GetOption* option) {
CHECK(size == num_col_ * num_row_);
integer_t whole_table = -1;
Get(whole_table, data, size, option);
}
template <typename T>
void MatrixWorker<T>::Get(integer_t row_id, T* data, size_t size,
const GetOption* option) {
if (row_id >= 0) CHECK(size == num_col_);
for (auto i = 0; i < num_row_ + 1; ++i) row_index_[i] = nullptr;
// row_index are used to hold the address that from user code
// so that multiverso can write back to user code.
if (row_id == -1) {
row_index_[num_row_] = data;
}
else {
row_index_[row_id] = data; // data_ = data;
}
bool is_option_mine = false;
if (is_sparse_ && option == nullptr) {
// the get option is required by the sparse update logic.
is_option_mine = true;
option = new GetOption();
}
WorkerTable::Get(Blob(&row_id, sizeof(integer_t)), option);
Log::Debug("[Get] worker = %d, #row = %d\n", MV_Rank(), row_id);
if (is_option_mine) delete option;
}
template <typename T>
void MatrixWorker<T>::Get(const std::vector<integer_t>& row_ids,
const std::vector<T*>& data_vec,
size_t size, const GetOption* option) {
CHECK(size == num_col_);
CHECK(row_ids.size() == data_vec.size());
for (auto i = 0; i < num_row_ + 1; ++i) row_index_[i] = nullptr;
for (auto i = 0; i < row_ids.size(); ++i) {
row_index_[row_ids[i]] = data_vec[i];
}
bool is_option_mine = false;
if (is_sparse_ && option == nullptr) {
// the get option is required by the sparse update logic.
is_option_mine = true;
option = new GetOption();
}
WorkerTable::Get(Blob(row_ids.data(), sizeof(integer_t)* row_ids.size()), option);
Log::Debug("[Get] worker = %d, #rows_set = %d / %d\n",
MV_Rank(), row_ids.size(), num_row_);
if (is_option_mine) delete option;
}
template <typename T>
void MatrixWorker<T>::Get(T* data, size_t size, integer_t* row_ids,
integer_t row_ids_size,
const GetOption* option) {
CHECK(size == num_col_ * row_ids_size);
for (auto i = 0; i < num_row_ + 1; ++i) row_index_[i] = nullptr;
for (auto i = 0; i < row_ids_size; ++i) {
row_index_[row_ids[i]] = &data[i * num_col_];
}
Blob ids_blob(row_ids, sizeof(integer_t) * row_ids_size);
bool is_option_mine = false;
if (is_sparse_ && option == nullptr) {
// the get option is required by the sparse update logic.
is_option_mine = true;
option = new GetOption();
}
WorkerTable::Get(ids_blob, option);
Log::Debug("[Get] worker = %d, #rows_set = %d / %d\n",
MV_Rank(), row_ids_size, num_row_);
if (is_option_mine) delete option;
}
template <typename T>
void MatrixWorker<T>::Add(T* data, size_t size, const AddOption* option) {
CHECK(size == num_col_ * num_row_);
if (is_sparse_ && true) {
// REVIEW[qiwye] does this pre-optimation bring too much overhead?
std::vector<integer_t> row_ids;
for (auto i = 0; i < num_row_; i++) {
auto zero_count = std::count(data + (i * num_col_), data + ((i + 1) * num_col_), (T)0);
if (zero_count != num_col_) {
row_ids.push_back(i);
}
}
Blob ids_blob(row_ids.data(), sizeof(integer_t)* row_ids.size());
Blob data_blob(row_ids.size() * row_size_);
for (auto i = 0; i < row_ids.size(); ++i) {
memcpy(data_blob.data() + i * row_size_,
data + row_ids[i] * num_col_, row_size_);
}
bool is_option_mine = false;
if (option == nullptr) {
is_option_mine = true;
option = new AddOption();
}
WorkerTable::Add(ids_blob, data_blob, option);
Log::Debug("[Add] Sparse: worker = %d, #rows_set = %d / %d\n",
MV_Rank(), row_ids.size(), num_row_);
if (is_option_mine) delete option;
}
else {
integer_t whole_table = -1;
Add(whole_table, data, size, option);
}
}
template <typename T>
void MatrixWorker<T>::Add(integer_t row_id, T* data, size_t size,
const AddOption* option) {
if (row_id >= 0) CHECK(size == num_col_);
Blob ids_blob(&row_id, sizeof(integer_t));
Blob data_blob(data, size * sizeof(T));
bool is_option_mine = false;
if (is_sparse_ && option == nullptr) {
// add option is required by the sparse update logic.
is_option_mine = true;
option = new AddOption();
}
WorkerTable::Add(ids_blob, data_blob, option);
Log::Debug("[Add] worker = %d, #row = %d\n", MV_Rank(), row_id);
if (is_option_mine) delete option;
}
template <typename T>
void MatrixWorker<T>::Add(const std::vector<integer_t>& row_ids,
const std::vector<T*>& data_vec,
size_t size,
const AddOption* option) {
CHECK(size == num_col_);
Blob ids_blob(&row_ids[0], sizeof(integer_t)* row_ids.size());
Blob data_blob(row_ids.size() * row_size_);
// copy each row
for (auto i = 0; i < row_ids.size(); ++i) {
memcpy(data_blob.data() + i * row_size_, data_vec[i], row_size_);
}
bool is_option_mine = false;
if (is_sparse_ && option == nullptr) {
// add option is required by the sparse update logic.
is_option_mine = true;
option = new AddOption();
}
WorkerTable::Add(ids_blob, data_blob, option);
Log::Debug("[Add] worker = %d, #rows_set = %d / %d\n", MV_Rank(), row_ids.size(), num_row_);
if (is_option_mine) delete option;
}
template <typename T>
void MatrixWorker<T>::Add(T* data, size_t size, integer_t* row_ids,
integer_t row_ids_size,
const AddOption* option) {
CHECK(size == num_col_ * row_ids_size);
Blob ids_blob(row_ids, sizeof(integer_t) * row_ids_size);
Blob data_blob(data, row_ids_size * row_size_);
bool is_option_mine = false;
if (is_sparse_ && option == nullptr) {
// add option is required by the sparse update logic.
is_option_mine = true;
option = new AddOption();
}
WorkerTable::Add(ids_blob, data_blob, option);
Log::Debug("[Add] worker = %d, #rows_set = %d / %d\n", MV_Rank(), row_ids_size, num_row_);
if (is_option_mine) delete option;
}
template <typename T>
int MatrixWorker<T>::Partition(const std::vector<Blob>& kv,
MsgType partition_type,
std::unordered_map<int, std::vector<Blob>>* out) {
CHECK(kv.size() == 1 || kv.size() == 2 || kv.size() == 3);
CHECK_NOTNULL(out);
size_t keys_size = kv[0].size<integer_t>();
integer_t *keys = reinterpret_cast<integer_t*>(kv[0].data());
if (keys_size == 1 && keys[0] == -1) {
for (auto i = 0; i < num_server_; ++i) {
int rank = MV_ServerIdToRank(i);
(*out)[rank].push_back(kv[0]);
}
if (partition_type == MsgType::Request_Add) {
for (integer_t i = 0; i < num_server_; ++i) {
int rank = MV_ServerIdToRank(i);
Blob blob(kv[1].data() + server_offsets_[i] * row_size_,
(server_offsets_[i + 1] - server_offsets_[i]) * row_size_);
(*out)[rank].push_back(blob);
if (kv.size() == 3) { // adding update options
(*out)[rank].push_back(kv[2]);
}
}
}
else if (partition_type == MsgType::Request_Get) {
for (auto i = 0; i < num_server_; ++i) {
int rank = MV_ServerIdToRank(i);
if (kv.size() == 2) { // adding update options
(*out)[rank].push_back(kv[1]);
}
}
CHECK(get_reply_count_ == 0);
get_reply_count_ = static_cast<int>(out->size());
}
return static_cast<int>(out->size());
}
// count row number in each server
std::vector<int> dest;
std::vector<integer_t> count;
count.resize(num_server_, 0);
integer_t num_row_each = num_row_ / num_server_;
for (auto i = 0; i < keys_size; ++i) {
int dst = keys[i] / num_row_each;
dst = (dst >= num_server_ ? num_server_ - 1 : dst);
dest.push_back(dst);
++count[dst];
}
for (auto i = 0; i < num_server_; i++) { // allocate memory for blobs
int rank = MV_ServerIdToRank(i);
if (count[i] != 0) {
std::vector<Blob>& vec = (*out)[rank];
vec.push_back(Blob(count[i] * sizeof(integer_t))); // row indices
if (partition_type == MsgType::Request_Add)
vec.push_back(Blob(count[i] * row_size_)); // row values
}
}
count.clear();
count.resize(num_server_, 0);
integer_t offset = 0;
for (auto i = 0; i < keys_size; ++i) {
int dst = dest[i];
int rank = MV_ServerIdToRank(dst);
(*out)[rank][0].As<integer_t>(count[dst]) = keys[i];
if (partition_type == MsgType::Request_Add) { // copy add values
memcpy(&((*out)[rank][1].As<T>(count[dst] * num_col_)),
kv[1].data() + offset, row_size_);
offset += row_size_;
}
++count[dst];
}
for (int i = 0; i < num_server_; ++i) {
int rank = MV_ServerIdToRank(i);
if (count[i] != 0) {
if (partition_type == MsgType::Request_Add && kv.size() == 3) {
(*out)[rank].push_back(kv[2]);
}
else if (partition_type == MsgType::Request_Get && kv.size() == 2) {
(*out)[rank].push_back(kv[1]);
}
}
}
if (partition_type == MsgType::Request_Get) {
CHECK(get_reply_count_ == 0);
get_reply_count_ = static_cast<int>(out->size());
}
// TODO(qiwye): adding logic for filtering
return static_cast<int>(out->size());
}
template <typename T>
void MatrixWorker<T>::ProcessReplyGet(std::vector<Blob>& reply_data) {
size_t keys_size = reply_data[0].size<integer_t>();
integer_t* keys = reinterpret_cast<integer_t*>(reply_data[0].data());
T* data = reinterpret_cast<T*>(reply_data[1].data());
if (is_sparse_) {
if (row_index_[num_row_] != nullptr) {
for (auto i = 0; i < keys_size; ++i) {
row_index_[keys[i]] = row_index_[num_row_] + keys[i] * num_col_;
}
}
}
// get all rows, only happen in T*
if (keys_size == 1 && keys[0] == -1) {
int server_id = reply_data[2].As<int>();
CHECK_NOTNULL(row_index_[num_row_]);
CHECK(server_id < server_offsets_.size() - 1);
memcpy(row_index_[num_row_] + server_offsets_[server_id] * num_col_,
data, reply_data[1].size());
}
else {
CHECK(reply_data[1].size() == keys_size * row_size_);
integer_t offset = 0;
for (auto i = 0; i < keys_size; ++i) {
CHECK_NOTNULL(row_index_[keys[i]]);
memcpy(row_index_[keys[i]], data + offset, row_size_);
offset += num_col_;
}
}
--get_reply_count_;
}
template <typename T>
MatrixServer<T>::MatrixServer(const MatrixOption<T>& option) :
MatrixServer(option.num_row, option.num_col, option.is_sparse, option.is_pipeline) {}
template <typename T>
MatrixServer<T>::MatrixServer(integer_t num_row, integer_t num_col,
bool is_sparse, bool is_use_pipeline) :
ServerTable(), num_col_(num_col), is_sparse_(is_sparse) {
server_id_ = MV_ServerId();
CHECK(server_id_ != -1);
integer_t size = num_row / MV_NumServers();
if (size > 0) {
row_offset_ = size * server_id_;
if (server_id_ == MV_NumServers() - 1) {
size = num_row - row_offset_;
}
}
else {
size = server_id_ < num_row ? 1 : 0;
row_offset_ = server_id_;
}
my_num_row_ = size;
storage_.resize(my_num_row_ * num_col);
updater_ = Updater<T>::GetUpdater(my_num_row_ * num_col);
Log::Info("[Init] Server = %d, type = matrixTable, size = [ %d x %d ], total = [ %d x %d ].\n",
server_id_, size, num_col, num_row, num_col);
if (is_sparse_) {
workers_nums_ = multiverso::MV_NumWorkers();
if (is_use_pipeline) {
workers_nums_ *= 2;
}
up_to_date_ = new bool*[workers_nums_];
for (auto i = 0; i < workers_nums_; ++i) {
up_to_date_[i] = new bool[my_num_row_];
memset(up_to_date_[i], 0, sizeof(bool) * my_num_row_);
}
Log::Info("[Init] Server = %d, with sparse updater.\n", server_id_);
}
}
template <typename T>
void MatrixServer<T>::ProcessAdd(const std::vector<Blob>& data) {
CHECK(data.size() == 2 || data.size() == 3);
// TODO(qiwye): Adding filter logic
size_t keys_size = data[0].size<integer_t>();
integer_t* keys = reinterpret_cast<integer_t*>(data[0].data());
T *values = reinterpret_cast<T*>(data[1].data());
AddOption* option = nullptr;
if (data.size() == 3) {
option = new AddOption(data[2].data(), data[2].size());
}
if (is_sparse_) {
CHECK_NOTNULL(option);
UpdateAddState(option->worker_id(), data[0]);
}
// add all values
if (keys_size == 1 && keys[0] == -1) {
size_t ssize = storage_.size();
CHECK(ssize == data[1].size<T>());
updater_->Update(ssize, storage_.data(), values, option);
Log::Debug("[ProcessAdd] Server = %d, adding all rows offset = %d, #rows = %d\n",
server_id_, row_offset_, ssize / num_col_);
}
else {
CHECK(data[1].size() == keys_size * sizeof(T) * num_col_);
integer_t offset_v = 0;
CHECK(storage_.size() >= keys_size * num_col_);
for (auto i = 0; i < keys_size; ++i) {
integer_t offset_s = (keys[i] - row_offset_) * num_col_;
updater_->Update(num_col_, storage_.data(), values + offset_v, option, offset_s);
offset_v += num_col_;
}
Log::Debug("[ProcessAdd] Server = %d, adding #rows = %d\n",
server_id_, keys_size);
}
delete option;
}
template <typename T>
void MatrixServer<T>::ProcessGet(const std::vector<Blob>& data,
std::vector<Blob>* result) {
// TODO(qiwye): Adding filter logic
CHECK(data.size() == 1 || data.size() == 2);
CHECK_NOTNULL(result);
size_t keys_size = data[0].size<integer_t>();
integer_t* keys = reinterpret_cast<integer_t*>(data[0].data());
std::vector<integer_t>* outdated_rows;
GetOption* option = nullptr;
if (data.size() == 2) {
option = new GetOption(data[1].data(), data[1].size());
}
if (is_sparse_) {
CHECK_NOTNULL(option);
outdated_rows = new std::vector<integer_t>();
UpdateGetState(option->worker_id(), keys, keys_size, outdated_rows);
keys_size = outdated_rows->size();
keys = reinterpret_cast<integer_t*>(outdated_rows->data());
result->push_back(Blob(outdated_rows->data(), keys_size * sizeof(T)));
}
else {
result->push_back(data[0]);
}
// get all rows
if (keys_size == 1 && keys[0] == -1) {
Blob value(sizeof(T) * storage_.size());
T* pvalues = reinterpret_cast<T*>(value.data());
updater_->Access(storage_.size(), storage_.data(), pvalues);
result->push_back(value);
result->push_back(Blob(&server_id_, sizeof(int)));
Log::Debug("[ProcessGet] Server = %d, getting all rows offset = %d, #rows = %d\n",
server_id_, row_offset_, storage_.size() / num_col_);
return;
}
integer_t row_size = sizeof(T)* num_col_;
result->push_back(Blob(keys_size * row_size));
T* vals = reinterpret_cast<T*>((*result)[1].data());
integer_t offset_v = 0;
for (auto i = 0; i < keys_size; ++i) {
integer_t offset_s = GetPhysicalRow(keys[i]) * num_col_;
updater_->Access(num_col_, storage_.data(), vals + offset_v, offset_s);
offset_v += num_col_;
}
Log::Debug("[ProcessGet] Server = %d, getting row #rows = %d\n",
server_id_, keys_size);
delete option;
}
template <typename T>
void MatrixServer<T>::UpdateAddState(int,
Blob keys_blob) {
size_t keys_size = keys_blob.size<integer_t>();
integer_t* keys = reinterpret_cast<integer_t*>(keys_blob.data());
if (keys_size == 1 && keys[0] == -1) {
for (auto id = 0; id < workers_nums_; ++id) {
for (auto local_row_id = 0; local_row_id < this->my_num_row_; ++local_row_id) {
up_to_date_[id][local_row_id] = false;
}
}
}
else {
for (auto id = 0; id < workers_nums_; ++id) {
for (auto i = 0; i < keys_size; ++i) {
auto local_row_id = GetPhysicalRow(keys[i]);
up_to_date_[id][local_row_id] = false;
}
}
}
}
template <typename T>
void MatrixServer<T>::UpdateGetState(int worker_id, integer_t* keys,
size_t key_size, std::vector<integer_t>* out_rows) {
if (worker_id == -1) {
for (auto local_row_id = 0; local_row_id < this->my_num_row_; ++local_row_id) {
out_rows->push_back(GetLogicalRow(local_row_id));
}
return;
}
if (key_size == 1 && keys[0] == -1) {
for (auto local_row_id = 0; local_row_id < this->my_num_row_; ++local_row_id) {
if (!up_to_date_[worker_id][local_row_id]) {
out_rows->push_back(GetLogicalRow(local_row_id));
up_to_date_[worker_id][local_row_id] = true;
}
}
}
else {
for (auto i = 0; i < key_size; ++i) {
auto global_row_id = keys[i];
auto local_row_id = GetPhysicalRow(global_row_id);
if (!up_to_date_[worker_id][local_row_id]) {
up_to_date_[worker_id][local_row_id] = true;
out_rows->push_back(global_row_id);
}
}
}
// if all rows are up-to-date, then send the first row
if (out_rows->size() == 0) {
out_rows->push_back(GetLogicalRow(0));
}
}
template <typename T>
void MatrixServer<T>::Store(Stream* s) {
s->Write(storage_.data(), storage_.size() * sizeof(T));
}
template <typename T>
void MatrixServer<T>::Load(Stream* s) {
s->Read(storage_.data(), storage_.size() * sizeof(T));
}
MV_INSTANTIATE_CLASS_WITH_BASE_TYPE(MatrixWorker);
MV_INSTANTIATE_CLASS_WITH_BASE_TYPE(MatrixServer);
} // namespace multiverso