fix workflows

fehiepsi · fehiepsi · commit bd060bf696ba · 2024-02-15T09:40:15.000-05:00
diff --git a/.github/workflows/main.yml b/.github/workflows/main.yml
@@ -0,0 +1,13 @@
+on: [push]
+
+jobs:
+  nikola_build:
+    runs-on: ubuntu-latest
+    name: 'Deploy Nikola to GitHub Pages'
+    steps:
+    - name: Check out
+      uses: actions/checkout@v2
+    - name: Build and Deploy Nikola
+      uses: getnikola/nikola-action@v4
+      with:
+        dry_run: false
diff --git a/.gitignore b/.gitignore
@@ -7,4 +7,3 @@ output
 .doit.db*
 site/pages/*.ipynb
 site/listings/*.py
-
diff --git a/notebooks/12_monsters_and_mixtures.ipynb b/notebooks/12_monsters_and_mixtures.ipynb
@@ -1294,7 +1294,9 @@
     "kC = 0  # value for contact\n",
     "kI = jnp.arange(2)  # values of intention to calculate over\n",
     "pdat = dict(A=kA, C=kC, I=kI)\n",
-    "phi = Predictive(m12_5.sampler.model, m12_5.get_samples())(random.PRNGKey(1), **pdat)[\n",
+    "post = m12_5.get_samples()\n",
+    "post.pop(\"phi\")\n",
+    "phi = Predictive(m12_5.sampler.model, post)(random.PRNGKey(1), **pdat)[\n",
     "    \"phi\"\n",
     "]"
    ]
@@ -1324,7 +1326,6 @@
     }
    ],
    "source": [
-    "post = m12_5.get_samples()\n",
     "for s in range(50):\n",
     "    pk = expit(post[\"cutpoints\"][s] - phi[s][..., None])\n",
     "    for i in range(6):\n",
@@ -1361,7 +1362,7 @@
     "kI = jnp.arange(2)  # values of intention to calculate over\n",
     "pdat = dict(A=kA, C=kC, I=kI)\n",
     "s = (\n",
-    "    Predictive(m12_5.sampler.model, m12_5.get_samples())(random.PRNGKey(1), **pdat)[\"R\"]\n",
+    "    Predictive(m12_5.sampler.model, post)(random.PRNGKey(1), **pdat)[\"R\"]\n",
     "    + 1\n",
     ")\n",
     "plt.hist(s[:, 0], bins=jnp.arange(0.5, 8), rwidth=0.1)\n",
